RetrogeneDB ID: retro_mluc_366

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:10335486..10337064(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000017173
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015516
• Aliases: None
• Description: None

Sequence

>retro_mluc_366
TTGGAGGAAGAGGTTGAGGAGGAGGAGGAAAGAGTGTTCGGCACCGGGAACATGGGCGGGTCCGACTGGGACAACATGGA
CTATGTGAGGGAGGACGACGACGACGATGGCGACGGCGACCACGACCACGACCACGACGACCTGGGGGTGGAGGTCGAGG
AGGCCGAAGAAGAAGTGCTGGAGGAGGATGTGGAAGTGCTGCGGGACCCGCGTCTAGATCCTCGGCAGTGCTTCACGTGC
CCCCAGTGCCGGAAGAGCTTTCCCAGCAGGAACTTCCGCCCCAACCTGCAGCTGGCCAACATGGTGGAGGTGATTCGGAA
TATGCACCCCACACCGGGTCGGGGCAGCCATAGGAATGAGCAGCGCATTTGTCCCAAACACCGAGAGGCCCAGACGCTCT
TCTGTGAGGTGGACGAAGAGGCCATCTGTGTGCTGTGCCGAGAATCCTGGGACCACAAGCAGCACAGCGTGGTGACATTG
GAGGAGGTGGTGCAGGAGTACCAGGCCAAACTGCAGGGGCATGTGGAACCTCTAAGAAAGCACTTGGAGATGGTGCAGAA
GTTGAAAGCCAAGGAGGAGAGGCGGGTGGCCAAGCTGAACAGCCAGATGAAGTCAGAGCTGGCAGCTGTGGCCTCAGAGT
TTGGACGGCTGACAAGGTTTCTGACTGAAGAGCAGGCAAGGCTGGAGCACCGCCTTCGAGAGATGTGCGAAGCCCAGCTG
GGCCGGGCGGAAGCATCGGCCAGTCTTCTGGCTGAGCAGGCTACCCAGCTGAGCTGCCTGCTATATGAGGCCCAGGAACG
GAGCCAGCAGGGGGCCCTGCCGCCGCCGCTTCAGGACATCAAGGAGACTTTCAATAGGTGTGAAAAGATACAGCTGCAGC
CCCCAGAGGTCTGGTCCCCTGACCGGTGTCAACCCCACAGCCATGACTTCCTGACAGACACCATCGTGAGGAAAATGAGC
CGGATGTTCTGTCAGGCTGTTCGAGTGGACCTGACACTGGACCCCGACACGGCTCACCCGGCCCTGATGCTGTCTCCTGA
TCGCCGGTGGGTCCACCTGGCAGAACGGCGGCAGGAGGTTGCTGACCATTCCAAGTGTTTCTCGGCCGACTGCTGCGTGC
TGGGGGCCCAGGGCTTCCGCTCTGGCCGGCACTACTGGGAGGTAGAGGTGGATGGGCAGCAGGGTTGGGCCGTGGGTGTT
GCCCGAGAATCATCTCATCATGAGGAGATGGGCTCTGGGGATTCCTCTGTGGGCACCGGGGATGCCAGTTCTTTCTCTGG
CCATCACCGCCACCTCCACCTACCCCAGCAGCCCCTGCTCCAGAGGGAAGTGTGGTGTGTGGGCACCAATGGCAACGGTT
ACCAGGCACAGAGTTCGACGGAGCGGACGCTGCTGAGCCCACATGAGAAACCACGGCGCTTTGGTGTGTACCTGGACTAT
GAGGCTGGGCGCCTGGACTTCTACAATGCAGAGACTCTGGCCCACGTGCACACCTTTTCAGCTGCCTTTCTGGGTGAGCG
CGTCTTCCCTTTCTTCCGGGTGTTCTCCAAGGGTACCCAAATCAAGCTGTGCCCTTGA

Alignment

ORF - retro_mluc_366 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.7 %
• Parental protein coverage: 84.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LEEEVEEEEEGVFWTGGLGGSDWDNMDYVWEEEEEEDLDYYLDMEEDLG-EDEEDEEEVLEEEEELDPVS
          LEEEVEEEEE.VF.TG..GGSDWDNMDYV.E...............DLG.E.EE.EEEVLE..E......
Retrocopy LEEEVEEEEERVFGTGNMGGSDWDNMDYVREDDDDDGDGDHDHDHDDLGVEVEEAEEEVLE--EDVEVLR

Parental  SLPPPPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPAPGRGSRGGEQGVCPKHQEALKLFCEVD
          .....PR.CFTCPQCRKSFP.R.FRPNLQLANMV.VIR.MHP.PGRGS...EQ..CPKH.EA..LFCEVD
Retrocopy DPRLDPRQCFTCPQCRKSFPSRNFRPNLQLANMVEVIRNMHPTPGRGSHRNEQRICPKHREAQTLFCEVD

Parental  EEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHVEPLRKHLEAVQKMRAKEERRVTELKSQMKSELA
          EEAICV.CRES..HKQHSVV.LEEVVQEY.AKLQGHVEPLRKHLE.VQK..AKEERRV..L.SQMKSELA
Retrocopy EEAICVLCRESWDHKQHSVVTLEEVVQEYQAKLQGHVEPLRKHLEMVQKLKAKEERRVAKLNSQMKSELA

Parental  AVASEFGRLTRFLAEEQAGLERRLREMHEAQLGRAGAAASLLAEQAAQLSRLLNEAQERSQQGGLRL-LK
          AVASEFGRLTRFL.EEQA.LE.RLREM.EAQLGRA.A.ASLLAEQA.QLS.LL.EAQERSQQG.L...L.
Retrocopy AVASEFGRLTRFLTEEQARLEHRLREMCEAQLGRAEASASLLAEQATQLSCLLYEAQERSQQGALPPPLQ

Parental  DIKETFSRCEEIQLQPPEIWSPDLCQPHSHDFLTDAIVRKMSRMFCQAAREVDLTLDPDTAHPALMLSPD
          DIKETF.RCE.IQLQPPE.WSPD.CQPHSHDFLTD.IVRKMSRMFCQA.R.VDLTLDPDTAHPALMLSPD
Retrocopy DIKETFNRCEKIQLQPPEVWSPDRCQPHSHDFLTDTIVRKMSRMFCQAVR-VDLTLDPDTAHPALMLSPD

Parental  RRGVRLAERRQEVADHSKCFSADCCVLGAQGFRSGRHYWEVEVGGRRGWAVGAARESSRHREKVGSGGSS
          RR.V.LAERRQEVADHSKCFSADCCVLGAQGFRSGRHYWEVEV.G..GWAVG.ARESS.H.E..GSG.SS
Retrocopy RRWVHLAERRQEVADHSKCFSADCCVLGAQGFRSGRHYWEVEVDGQQGWAVGVARESSHH-EEMGSGDSS

Parental  VGIGDASSSSRHHHRRRRLHLPPQPLLQREVWCVGTNGKRYQAQSSTEQTLLSPSERPRRFGVYLDYEAG
          VG.GDASS.S.HH...R.LHLP.QPLLQREVWCVGTNG..YQAQSSTE.TLLSP.E.PRRFGVYLDYEAG
Retrocopy VGTGDASSFSGHH---RHLHLPQQPLLQREVWCVGTNGNGYQAQSSTERTLLSPHEKPRRFGVYLDYEAG

Parental  RLGFYNAETLAHVHTFSAAFLGERVFPFFRVFSKGTRIKLCP
          RL.FYNAETLAHVHTFSAAFLGERVFPFFRVFSKGT.IKLCP
Retrocopy RLDFYNAETLAHVHTFSAAFLGERVFPFFRVFSKGTQIKLCP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_366 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015516	1 retrocopy	retro_mluc_366 ,
Oryctolagus cuniculus	ENSOCUG00000003237	2 retrocopies	retro_ocun_1665, retro_ocun_1666,