RetrogeneDB ID: retro_mluc_335

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430529:239179..239908(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026822
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016567
• Aliases: None
• Description: None

Sequence

>retro_mluc_335
GACAATCTTCGGGAAGGGGCAGAGCAGAAGGTGGTATTCATCACGGGTCGAGTCCACCCAGGGGAAACACCCTCTTCCTT
TGTGTGCCAAGGGATCATTGGCTTCCTCATAAGCCAGCACCCAATGGCTCGTGTCCTGCGGGAACACCTGGTCTTCAAGA
TTGCACCAATGCTCAACCCTGATGGAGTCTACCCGGGCAATTACAGGTGCTCTCTGATGGGGTTTGACCTGAAGCGTCAC
TGGCTGGATCCCTCTCCATGGGCCCACCCTACCCTGTATGGGGTAAAACAGCTCATCATCCAGATGTACAACGACCCAAA
AACAAGCCTGGAGTTCTATATCGACATCCATGCTCACTCTACCATGATGAATGGCTTCCTGTACGGCAATGTCTTTGAGG
ATGAGGAGCGCTTCCAGAGGCAGGCCATCTTCCCCAAGCTGCTCTGCCAGAACGCTGAGGACTTCTCCTATTCCAGCACA
TCCTTCAACCGAGACGCCGTGAAGGCAGGCACTGGCCGCCGCTTCCTCGGTGGCCTCCTGGACCACACTTCCTCCTGCTA
CACCCTGGAGGTCTCCTTCTACAGCTACATCAGCGGGGGCAGCACTGCTGCGGTGCCCTCCACCGAGGAAGCCTGTATCC
TTGAAAGCCCAGGGCAACTGTGCTCAACCTCAAGAAGCTCATTGGCCTTCTGCAAGCTCACAAAAGTCACCAGTATCCCA
GCCCAGATG

Alignment

ORF - retro_mluc_335 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.68 %
• Parental protein coverage: 63.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DNLREGAEQKVVFITGRVHPGETPSSFVCQGIIDFLISQHPIARVLREHLVFKIAPMLNPDGVYLGNYRC
          DNLREGAEQKVVFITGRVHPGETPSSFVCQGII.FLISQHP.ARVLREHLVFKIAPMLNPDGVY.GNYRC
Retrocopy DNLREGAEQKVVFITGRVHPGETPSSFVCQGIIGFLISQHPMARVLREHLVFKIAPMLNPDGVYPGNYRC

Parental  SLMGFDLNRHWLDPSPWAHPTLYGVKQLIIQMYNDPKTSLEFYIDIHAHSTMMNGFMYGNVFEDEERFQR
          SLMGFDL.RHWLDPSPWAHPTLYGVKQLIIQMYNDPKTSLEFYIDIHAHSTMMNGF.YGNVFEDEERFQR
Retrocopy SLMGFDLKRHWLDPSPWAHPTLYGVKQLIIQMYNDPKTSLEFYIDIHAHSTMMNGFLYGNVFEDEERFQR

Parental  QAIFPKLLCQNAEDFSYSSTSFNRDAVKAGTGRRFLGGLLDHTSSCYTLEVSFYSYISGGTTAAVPYTEE
          QAIFPKLLCQNAEDFSYSSTSFNRDAVKAGTGRRFLGGLLDHTSSCYTLEVSFYSYISGG.TAAVP.TEE
Retrocopy QAIFPKLLCQNAEDFSYSSTSFNRDAVKAGTGRRFLGGLLDHTSSCYTLEVSFYSYISGGSTAAVPSTEE

Parental  A
          A
Retrocopy A

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_335 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016567	1 retrocopy	retro_mluc_335 ,