RetrogeneDB ID: retro_mluc_299

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429919:746315..749042(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003424
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011438
• Aliases: None
• Description: None

Sequence

>retro_mluc_299
ATGGCATCTGGGAAACCAACCCCTATGGACTCGCTCTCTTCCTGCCTCGCGCAGCTGACGGCGGCGGCCAGGGAGGGTCT
AGGTGGGACAAAGGACTCAGCCATCAACGAGACACCCTTGGGCCGTGCGCTCTTGGCTCTCCGCACGCGCCATGTCAAGG
CAGCGGGAGGAATTGAGCGCTTCCGGGCACGCGGCGGGCTCCACCCCCTTCTGGCGCTGCTACCACGAGCTTCGGTGGCT
GCAGCGTCGCCTGGCCCCGCCCCTTCGGCCGGCCCTGGCCCTTCGGCTGGCCCCGCCCCCTCCTCTGCACCCTTGTCGAC
CCTGGACTTGGTGCTTAGCATCCTAGCCGACTGCTGTACGGAAAGGGCGTGCCGGACTGAAGTGCGCAGACTCGGAGGCA
TTCTGTCTTTGGTGACTGTTCTGGAGTGTGTGAAGACAGACAGCATCCAGAACCGAGCAGCCCGTGCTCTGGGCAACTTA
GCCATGGAAGCTGAGAGCTGTGCGGACATCCATTCTGCTGGTGCTGTTCCCCTCCTCATTGAGAGCCTGACGGCCTACCA
CGACACACCTTGCTTGCAGAGCGTGATTCGCGCCCTCGGCAACCTGGCGGACTCCCCCCATCACCGCCTGGCCCTGGCAC
AGCAGGGAGCAGTGCGCCCACTGGTTGAGCTTCTGGCTGCTGCCCCGCACCCTGCGCTGACCTTGGCCCTAGTCCGTGCC
CTCCTAGAGCTGAGTCGAGGCTGCTCCCGTGCCTGTGCTGAGCAGCTAAGTCTGGGTGGAGGACTAGGCCCACTGGTCAG
TCTAGCCTCCCATCCCAGAAGGACAGTGCGCGAGTCAGCTATCCTGATCCTTGCCAACCTGTGTGCCCAGGGCCTGGTAC
GGCCTGCCCTGGGCAATGCTGGTGGTGTGGAGGTGCTGCTGGGTGAGCTCCAGCAACGCCGAGGTCCCGGTGGGGCGGGC
CCAGCCTCCCAGCAGCCCCTGGTGCAGGCTGTGTGCCTACTTTGCCGGGAGGCCATCAACCGAGCCCGGCTGCGGGATGC
TGGTGGTTTGGAGCTGCTGATGGGACTCTTGCGGGATCCTCATGCCAGCGCCTGGCACCCTTGTGTCGTGGCTGCCCTTG
AGCGCTTCCTCTATGATCCAGGGGCCCTGGGCCAACTGCAGGCTCTGGGGCTTGCACCTCTCTTGGCCGGGCAGCTGTGT
GGCGAGCTTGGTGATGAGGAAGAAGAGGGAAAAGAAGCTGCTTCCTGGGACTTTCCTGAGGAGGGGACCCCTGAGCAGGT
AGAAGCCAGAAGCTTCCGAAGCCTCAGGTCGTGGCTGATATCCGAGGGCTACGCCGCAGGCCCGGAAGACATCTCTCTGG
ACCGGTCTCCAGAGCGCTGTCCAGGGCCTCCTCCACAGCCTGCGCCCCCTGAGCAGGCCCAGGCAGCCAGTCCCGCCCGG
GGCCCAGCCTTGGTGCGGACGCCTCGAGGCCGCAGCCCTGCCACCAAGAAGTCTTGGGGCCGCGAGGTGCCAGCGCTGCT
GCTGCTTTCACACTTCTCCCAGGCGCCAGACCCCAGCGGGGCGCTGGTGACAGGCCCGGTCCTGGGCGGCCTGCTGGCCT
ACGTGACGAAGGCGCCAGGCCCACTGAGCCCGAGCGCACTGAACATCCTGGCGCGCCTCACCTGCAACCCTGCCTGCCTC
GAGGCCTTCGTGTGCAGCTATGGTGCCGCGCTGCTGCGAGCCTGGCTGGTGCTGGGTGTCGCCCCGGACGACTGGCCCAC
GCTGCGTGCCCGGCCCCCCTGTCAGCGCAGCGAGCACCGGGAGCTGGGTGAAATGCTGCTGCAGAACCTGACGGTGCAGG
CGGAGTCGCCCTTCGGAGTGGGGGTTCTCACTCACCTGCTGCTCTCCGGGAGTCCTGAGGACCGTGTGGCCTGTGCGCTG
ACCTTGCCCTTCATTTGTCGGAAGCCCTCTCTGTGGCGCCGGCTACTTCTGGACCAGGGCGGCCTCCGACTCCTCGTCTC
GGCGCTGACGCGGCCCGCCCCGCACCCACTCTTCCTCTTCTTTGCTGCAGACTCCCTTTCCTGCCTCCACAGCCTGGTGT
CTCCCACTGTGAGCCCAGCCCCGCCACCTGCAAGCCCCTTGGACCTAGACCCGCCCTCCCCTTGCCACTATGAACCTCTG
CTGGGCCCGGCTCCCATCCCAGCCCCCAATCTGCACTTCCTCCTGGACTCAGGCCTCCGGCTCCCCGCCCGGCGAGCCGC
CTCATCTACTGCCTCCCCTTTCTTCCGGGCCCTGCTAGCTGGCAGCTTTGCTGAAGCCCAGATGGATGTGGTACCTCTTC
CATACCTATCACCCAGCGCAGCCTGGCCTATCATGCATCACCTGCATGGCTGCCGCGGCTGTGGAGCAACCCTGGGGCCC
ATCCCCCCACCAGGCCAGCCCCTGCTGGGCTCAGAGGTGGAGGAGGCACTGGAGGCTGCTGACCGTTTCCTGCTGCGTGG
GCTGGAGGAGGAACTGGAAGAGGCTGTGGGCCGTATCCACCTGGGATCCCAAGGTGGCCCAGAGTCAGTGGGTGAGGTAT
TCCGCCTGGGCCGGCCTCGGCTGGCTGCCCACTGTGCACGCTGGATCCTGGGGCCGGGGCAGTGCCCACGGAAGCGGGCT
CTGGCCTTAGTGGGGCTGTTGGAGGCAGCAGGGGAGGAAGCAGGTCCCCTGACTGAGGCTTTGCTGGCTGTGGTGATGGG
AGTTTAA

Alignment

ORF - retro_mluc_299 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.26 %
• Parental protein coverage: 88.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSSIESAASDGPAPSPGPAPSSASLSTSSPPARLRKTLDLALSILADCCTEGACRAEVRRLGGILSLVTI
          P.....AAS.GPAPS.GP.PS.A....SS.P.....TLDL.LSILADCCTE.ACR.EVRRLGGILSLVT.
Retrocopy PRASVAAASPGPAPSAGPGPS-AGPAPSSAPL---STLDLVLSILADCCTERACRTEVRRLGGILSLVTV

Parental  LQCVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAYQDSHCLQSVIRALRNLADSPQHRL
          L.CVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAY.D..CLQSVIRAL.NLADSP.HRL
Retrocopy LECVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAYHDTPCLQSVIRALGNLADSPHHRL

Parental  ALAQQGAVRPLAELLAAPPDPALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRTVRESA
          ALAQQGAVRPL.ELLAA.P.PALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHP.RTVRESA
Retrocopy ALAQQGAVRPLVELLAAAPHPALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPRRTVRESA

Parental  ILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGPSGAGPASQQPLVRAVCLLCREAINRARLRDAGGL
          ILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGP.GAGPASQQPLV.AVCLLCREAINRARLRDAGGL
Retrocopy ILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGPGGAGPASQQPLVQAVCLLCREAINRARLRDAGGL

Parental  ELLIGLLRDPHASAWHPRVVAALVGFLYDTGALGRLQALGLVPLLAGQLCGELGDEEEEGKEAASWDFPE
          ELL.GLLRDPHASAWHP.VVAAL..FLYD.GALG.LQALGL.PLLAGQLCGELGDEEEEGKEAASWDFPE
Retrocopy ELLMGLLRDPHASAWHPCVVAALERFLYDPGALGQLQALGLAPLLAGQLCGELGDEEEEGKEAASWDFPE

Parental  ERTPERVEAGSFRSLRSWLISEGYAAGPEDISPDRSPERCPRPPPPPAPPEQAQAASPARSPALVRTPRG
          E.TPE.VEA.SFRSLRSWLISEGYAAGPEDIS.DRSPERCP.PPP.PAPPEQAQAASPAR.PALVRTPRG
Retrocopy EGTPEQVEARSFRSLRSWLISEGYAAGPEDISLDRSPERCPGPPPQPAPPEQAQAASPARGPALVRTPRG

Parental  RSPATEESWGREGPALLLLSRFSQAQDPSGALVTGPALCGLLAYVTRAPGPPSPRALRILARLTCNPACL
          RSPAT..SWGRE.PALLLLS.FSQA.DPSGALVTGP.L.GLLAYVT.APGP.SP.AL.ILARLTCNPACL
Retrocopy RSPATKKSWGREVPALLLLSHFSQAPDPSGALVTGPVLGGLLAYVTKAPGPLSPSALNILARLTCNPACL

Parental  EAFVCSYGAALLRAWLVLGVAPDDWPTLRARPPSLRSQHRELGEMLLQNLTVQAESPFGVGALTHLLLSG
          EAFVCSYGAALLRAWLVLGVAPDDWPTLRARPP..RS.HRELGEMLLQNLTVQAESPFGVG.LTHLLLSG
Retrocopy EAFVCSYGAALLRAWLVLGVAPDDWPTLRARPPCQRSEHRELGEMLLQNLTVQAESPFGVGVLTHLLLSG

Parental  SPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLLLSALTRPAPHPLFLFFAADSLSCLHSLVSPPVSPA
          SPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLL.SALTRPAPHPLFLFFAADSLSCLHSLVSP.VSPA
Retrocopy SPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLLVSALTRPAPHPLFLFFAADSLSCLHSLVSPTVSPA

Parental  PPPATPLDLDPPSPCHYEPLLGPAPIPAPDLHFLLDSGLRLPAQRAASSAASPFFRALLAGSFAEAQMDL
          PPPA.PLDLDPPSPCHYEPLLGPAPIPAP.LHFLLDSGLRLPA.RAASS.ASPFFRALLAGSFAEAQMD.
Retrocopy PPPASPLDLDPPSPCHYEPLLGPAPIPAPNLHFLLDSGLRLPARRAASSTASPFFRALLAGSFAEAQMDV

Parental  VPLRDLSPSAAWPIMHHLHGCRGCGAALRPIPPPGQPLLGSEAEEALEAAGRFLLPGLEEELEEALGRIH
          VPL..LSPSAAWPIMHHLHGCRGCGA.L.PIPPPGQPLLGSE.EEALEAA.RFLL.GLEEELEEA.GRIH
Retrocopy VPLPYLSPSAAWPIMHHLHGCRGCGATLGPIPPPGQPLLGSEVEEALEAADRFLLRGLEEELEEAVGRIH

Parental  LGSQGSLESMGEVLRLGRPRMAVHCARWVLGPGQCTRKRALALVELVEAAGEEAGPLTEAFLAVVMGV
          LGSQG..ES.GEV.RLGRPR.A.HCARW.LGPGQC.RKRALALV.L.EAAGEEAGPLTEA.LAVVMGV
Retrocopy LGSQGGPESVGEVFRLGRPRLAAHCARWILGPGQCPRKRALALVGLLEAAGEEAGPLTEALLAVVMGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_299 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011438	1 retrocopy	retro_mluc_299 ,