RetrogeneDB ID: retro_mluc_276

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429815:7173343..7176427(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000014633
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002920
• Aliases: None
• Description: None

Sequence

>retro_mluc_276
ATGGCGGACAAAACTCCAGGTGGCTCTCAGAAGGCCAGTTCAAAGACAAGACCATCAGATGTTCATTCATCTGGATCTTC
AGATGCACATATGGATGCATCTGGACCCTCAGAAAGTGATATGCCAAGTCTAACACGACCTAAGAGCCCAAGAAAACATA
ATTATAGGAATGAAAGTGCCCGTGAAAGCCTTTGTGATTATCCTCACCAGAATACTTCAAACCCTCTTCTAGAAAACAAA
CTTAACGCATTCAGTATTGGAAAAATGAGTACAGCTAAGCGAACTTTAAGTAAGAAGGAGCAAGAAGAATTGAAGAAAAA
GGAGGCTGAAAAGGCTGCTGCTGCGATTTATGAGGAATTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAAGTGAAGA
CATTTGTGCGCGGAGGTGTTGTTAATGCAGCTAAAGAAGAACACGAAGCAGATGAAAAAAGAGGCAAAATCTATAAGCCA
TCTTCAAGATTTGCAGATCAAGAAAACCCTCCAAATCAGTCATCCAACGAAAGACCACCATCTCTTCTTGTGATAGAAAC
CAAAAAACCTCCACTGAAGAAAGGGGAGAAAGAAAAGAAAAAAAGCAATTTGGAACTCTTCAAAGAAGAATTGAAACAAA
TTCAAGAAGAGCGTGATGAGAGACATAAAACAAAAGGCAGGTTAAGTCGCTTTGAGCCTCAGTCAGATTCTGATGGTCAG
CGGCGTTCCATGGATGCGCCTTCAAGAAGAAATAGATCAGCTGTTCTTGATGATTATGCGCCTGGGTCACATGATGTGGG
AGATCCAAGCACTACTAATTTATACCTTGGAAACATTAATCCACAGATGAATGAAGAAATGCTGTGCCAAGAATTTGGAA
GATTTGGACCATTAGCCAGTGTGAAAATTATGTGGCCTAGAACTGATGAAGAAAGAGCAAGGGAGAGAAATTGTGGCTTT
GTGGCCTTTATGAATAGAAGAGATGCTGAAAGAGCTTTAAAAAATTTAAATGGAAAGATGATTATGTCTTTTGAAATGAA
GTTAGGTTGGGGTAAAGCTATGCCTATTCCTCCACATCCAATATACATTCCGCCGTCTATGATGGAAGATATGCTTCCCC
CACCTCCATCAGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGGTTAAAAAACCCCAATGCTCCCATGTTACCACCACCT
AAAAACAAGGAGGATTTTGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTTATCCCAACAGAAAGGAATTTGCTCGC
CCTGATACATCGAATGATAGAGTTTGTTGTACGTGAAGGGCCAATGTTTGAAGCTATGATTATGAACAGAGAAATCAACA
ATCCCATGTTCAGATTCTTATTTGAAAACCAGACACCAGCCCATGTTTACTATAGGTGGAAGCTTTATTCTCTTCTGCAG
GGAGATTCTCCAACTAAGTGGCGGATGGAAGATTTTCGTATGTTCAAAAATGGATCTTTTTGGAGGCCACCACCATTAAA
TCCATACCTGCACGGGATGTCAGAAAAGCAAGAAACAGAAGCTTTTGTAGAGGAGCCTAATAAAAAGGGAGCACTTAAGG
AAGAACAGAGGGACAAATTAGAAGAAATCCTGCAACGGTTAACTCCAAGGAAAAATGATATTGGAGATGCAATGGTTTTC
TGTCTTAATAATGCTGAAGCTGCTGAAGAAATAGTGGATTGCATTACTGAGTCATTGTCGATCCTAAAGACGCCCCTTCC
CAAAAAGATTGCCAGATTGTATTTGGTTTCTGATGTTTTGTACAATTCTTCAGCAAAAGTTGCCAATGCTTCCTATTATA
GAAAAATTTTTGAAACAAAGTTATGTCAGATATTTTCAGACCTCCATGCTACCTATCGTACAATTCAAGGCCATTTACAG
TCTGAAAACTTTAAGCAACGGGTAATGACCTGCGTCAGAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGAT
CAAATTGCAAAATATTTTCTTAGGACTTATAAATATTATTGAAGAAAAGGAAACAGAGGACGTACCAGATGACCTTGATG
GTGCCCCCATTGAAGAAGAGCTTGATGGTGCACCTTTGAAAGATGTGGATGGAATTCCTATTGATTCTACTCCCATTGAT
GATCTTGATGGAGTCCCTATGAAGAGTTTTGATGATGATCTTGATGGAGTGCCTTTAGTGGATGCCAATGAAGACTCAAA
GAAGAATGAGCCTATATTTAAAGTTGCTCCATCAAAATGGGAAGCTGTAGATGAATCTGAATTGGAAGCACAGGCTGTAA
CAACTTCTAAATGGGAGTTATTTGATCAGCATGAAGAATCAGAAAAAGAAGAAAATCAAAATCAAAAAGAAGAAAGTGAA
GATGAAGAAGATACTCAAAGTTCCAAATCTGAAAAACATCCTTTATATTCTAATCCAATCAAAGAAGAAATGACCGAGTC
CAAGTTCTCTAAGTACTCTGAAATGAGTGAGGAAAAACGAGCCAAACTTCGTGAAATTGAGCTCAAAGTTATGAAGTTTC
AGGATGAACTGGAATCTGGAAAACGACCTATAAAACCAGGCCAGAGCTTTCAGGAGCAAGTAGAACACTACAGAGATAAA
CTTCTTCAAGGAGAGAAAGAGAAAGAATTAGAAAGAGAACGAGAAAGAGTTAAGAAAGATAAAGAAAAATTGGAATCTCG
ATCCAAAGACAAGAAGGAAAAAGATGAGTGTACTCCAAGGAAAGAAAGGAAAAGGCGACACAGTATGTCCCCTGGCCCAT
CTCACAGTAGCAGTGGTAGACAAGTGAAGTCCCCATCACCAAAGTCGGAGCGATCAGAGCGTTCAGAAAGATCGCATAAA
GAGAGTTCGCGGTCCAGGTCATCTCACAGAGGTTCTCCTCGAGATGTTAGCAAAAAGGCCAAAAGATCACCATCTGGTTC
AAGAACACCTAAAAGGTCTAGCCGATCACGGTCTAGATCCCCTCAAAAATCAGGGAAGAAATCCAGATACCAGTCCCGAT
CTCCACACAGGTTTCATAAAAAGTTAAAGAAAAATAAACATTGA

Alignment

ORF - retro_mluc_276 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.18 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QTRSSDVHSSGSSDAHMDASGPSESDMPSRTRPKSPRKHNYRNESARESLCDSPHQNTSKPLLENKLKAF
          .TR.SDVHSSGSSDAHMDASGPSESDMPS.TRPKSPRKHNYRNESARESLCD.PHQNTS.PLLENKL.AF
Retrocopy KTRPSDVHSSGSSDAHMDASGPSESDMPSLTRPKSPRKHNYRNESARESLCDYPHQNTSNPLLENKLNAF

Parental  SIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKR
          SIGKMSTAKRTLSKKEQEELKKKE.EKAAA.IYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHE.DEKR
Retrocopy SIGKMSTAKRTLSKKEQEELKKKEAEKAAAAIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKEEHEADEKR

Parental  GKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKT
          GKIYKPSSRFADQ.NPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKT
Retrocopy GKIYKPSSRFADQENPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKT

Parental  KGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEF
          KGRLSRFEP.QSDSDGQRRSMDAPSRRNRS..VLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEF
Retrocopy KGRLSRFEP-QSDSDGQRRSMDAPSRRNRSA-VLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEF

Parental  GRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNVGKMIMSFEMKLGWGKAVPIPPHPI
          GRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLN.GKMIMSFEMKLGWGKA.PIPPHPI
Retrocopy GRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLN-GKMIMSFEMKLGWGKAMPIPPHPI

Parental  YIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHR
          YIPPSMME..LPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHR
Retrocopy YIPPSMMEDMLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHR

Parental  MIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFW
          MIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYS.LQGDSPTKWR.EDFRMFKNGSFW
Retrocopy MIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSLLQGDSPTKWRMEDFRMFKNGSFW

Parental  RPPPLNPYLHGMSEEQETEAFVEEPNKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEI
          RPPPLNPYLHGMSE.QETEAFVEEPNKKGALKEEQRDKLEEIL..LTPRKNDIGDAMVFCLNNAEAAEEI
Retrocopy RPPPLNPYLHGMSEKQETEAFVEEPNKKGALKEEQRDKLEEILQRLTPRKNDIGDAMVFCLNNAEAAEEI

Parental  VDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQS
          VDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK.FETKLCQIFSDL.ATYRTIQGHLQS
Retrocopy VDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKIFETKLCQIFSDLHATYRTIQGHLQS

Parental  ENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDG
          ENFKQRVMTC.RAWEDWAIYPEPFLIKLQNIFLGL.NIIEEKETEDVPDDLDGAPIEEELDGAPL.DVDG
Retrocopy ENFKQRVMTCVRAWEDWAIYPEPFLIKLQNIFLGLINIIEEKETEDVPDDLDGAPIEEELDGAPLKDVDG

Parental  IPIDATPIDDLDGVPIKSFDDDLDGVPLVDATEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELF
          IPID.TPIDDLDGVP.KSFDDDLDGVPLVDA.EDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELF
Retrocopy IPIDSTPIDDLDGVPMKSFDDDLDGVPLVDANEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELF

Parental  DQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVM
          DQHEESE.EENQNQ.EESEDEEDTQSSKSE.H.LYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVM
Retrocopy DQHEESEKEENQNQKEESEDEEDTQSSKSEKHPLYSNPIKEEMTESKFSKYSEMSEEKRAKLREIELKVM

Parental  KFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKEKDECTPTR
          KFQDELESGKRP.KPGQSFQEQVEHYRDKLLQ.EKEKELERERER.KKDKEKLESRSKDKKEKDECTP.R
Retrocopy KFQDELESGKRPIKPGQSFQEQVEHYRDKLLQGEKEKELERERERVKKDKEKLESRSKDKKEKDECTP-R

Parental  KERKRRHSMSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDASKKAKRSPSGSRTP
          KERKRRHSMSP.PS.SSSGR.VKSPSPKSERSERSERSHKESSRSRSSH..SPRD.SKKAKRSPSGSRTP
Retrocopy KERKRRHSMSPGPSHSSSGRQVKSPSPKSERSERSERSHKESSRSRSSHRGSPRDVSKKAKRSPSGSRTP

Parental  KRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH
          KRS.RSRSRSP.KSGKKSR.QSRSPHR.HKK.KKNKH
Retrocopy KRSSRSRSRSPQKSGKKSRYQSRSPHRFHKKLKKNKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_276 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002920	1 retrocopy	retro_mluc_276 ,
Tupaia belangeri	ENSTBEG00000016313	1 retrocopy	retro_tbel_1419,