RetrogeneDB ID: retro_mluc_2609

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431690:9008..10066(+)
• Located in intron of: ENSMLUG00000010875

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000586
• Aliases: None
• Description: None

Sequence

>retro_mluc_2609
ATGGAACAACAGAAGCGCAAGGGGCCAGAGTTGCCGCTGGTTCCGGTCAAGGGGCAGCGGCACGAGTTGCTGTTGGGAGC
GGCGGGGTCGGGCCCCGGAGCGGGACAGCAGCAGGCGGCCCCGGGAGCTTTGCTGCAAGCGGGGCCTCCTAGGTGTTCCT
CCCTTCAAGCCCCAATCATGCTTCTCTCAGGACATGAAGGGGACGTGTACTGCTGCAAGTTTCACCCCAATGGATCCACC
TTAGCATCTGCAGGATTCGACCCCCTGATGTTGCTGTAGAAGGTCTATGGTGACTGTGATAACTATGCAACATTGAAGGG
ACACGGCGGAGCAGTGATGGACTATAACACAGATGGCAGTCTGCTCTTCTCAGCATCCACAGATAAACGGTGGCAGCGTG
GGACAGCGAAACAGGTGAGCGGGTGAAAAGGCTGAAGGGACGTACTTCCTTTGTGAATTCCTGTGACCCGGCCAGGAGGG
GCCCCCAGCGTGTCGGCACTGGCAGTGACGATGGGACCGTTAAGCTTTGGGGCATGCGGAAGAGAGCGGCCATGCAGACA
TTTCAGAATACCTCCCAGGGGTTGGCTGTGACCTTCAATGACACAAGCCATCAGATTATTCCTGGTGGGACAGACAATGA
TATCAAGGTCTGGGACCTGCGTCAAAACGAGCTGACCGACACCACGCGAGGCCATGCAGAGTCAGTGACTGGCCCGAGTG
TACGTTCTGAGGGCTCTTATCTTCTGTCCGATGCAACGGACAATACAGTGCGGGCCCGGGATGTCCGGCCATTTGCTCCC
AAAGAGAGATGTGTCAAGACATTTCAAGGAAGTGTCCACAACTTTGAAAAGAATCTTCTGAGATGTTCTTGGTCACCTGA
GGGGAGCAAGATGGCAGCTGGCTCAGCCGACAGGTTTGTGTACGTGTGCGACACCACAAGCCGGAGGATGTGGTATAAGC
GGCCGGGCCACGCTGGCCCCATCAGTGAAGTGGCTCTCCACCCCGGTGAGCCCATCGCTCCCTCAGCATCCAGTGCCAAG
AGACTGAACATGGGGGAG

Alignment

ORF - retro_mluc_2609 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.74 %
• Parental protein coverage: 87.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IEQQKRKGPELPLVPVKRQRHELMLGAAGSGPGAGQQPPAPGALLQAGPPRCSSLQAPIMLLSGHEGEVY
          .EQQKRKGPELPLVPVK.QRHEL.LGAAGSGPGAGQQ..APGALLQAGPPRCSSLQAPIMLLSGHEG.VY
Retrocopy MEQQKRKGPELPLVPVKGQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGDVY

Parental  CCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDK-TVAVWDSE
          CCKFHPNGSTLASAGFD.L.LL..VYGDCDNYATLKGH.GAVM...YNTDGS.LFSASTDK.TVA.WDSE
Retrocopy CCKFHPNGSTLASAGFDPLMLL*KVYGDCDNYATLKGHGGAVMD--YNTDGSLLFSASTDK<TVAAWDSE

Parental  TGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII
          TGERVKRLKG.TSFVNSC.PARRGPQ.V.TGSDDGTVKLW..RK.AA.QTFQNT.Q.LAVTFNDTS.QII
Retrocopy TGERVKRLKGRTSFVNSCDPARRGPQRVGTGSDDGTVKLWGMRKRAAMQTFQNTSQGLAVTFNDTSHQII

Parental  SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQG
          .GG.DNDIKVWDLRQN.LT.T.RGHA.SVTG.S..SEGSYLLS.A.DNTVR..DVRPFAPKERCVK.FQG
Retrocopy PGGTDNDIKVWDLRQNELTDTTRGHAESVTGPSVRSEGSYLLSDATDNTVRARDVRPFAPKERCVKTFQG

Parental  NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPISKSVLTLG
          .VHNFEKNLLRCSWSP.GSK.AAGSADRFVYV.DTTSRR..YK.PGHAG.I.EVA.HP.EPI..S.....
Retrocopy SVHNFEKNLLRCSWSPEGSKMAAGSADRFVYVCDTTSRRMWYKRPGHAGPISEVALHPGEPIAPSASSAK

Parental  KRKLWE
          .....E
Retrocopy RLNMGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2609 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000586	3 retrocopies	retro_mluc_2200, retro_mluc_2609 , retro_mluc_318,
Myotis lucifugus	ENSMLUG00000002236	1 retrocopy	retro_mluc_11,
Myotis lucifugus	ENSMLUG00000015309	1 retrocopy	retro_mluc_77,
Myotis lucifugus	ENSMLUG00000016097	1 retrocopy	retro_mluc_213,
Macaca mulatta	ENSMMUG00000019406	1 retrocopy	retro_mmul_1461,
Rattus norvegicus	ENSRNOG00000012219	1 retrocopy	retro_rnor_2604,