RetrogeneDB ID: retro_mluc_2591

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431222:25453..26214(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029057
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: OR3A1
• Ensembl ID: ENSMLUG00000030303
• Aliases: None
• Description: None

Sequence

>retro_mluc_2591
ATGTACTTCTTCCTGGGGACTTATCAGTGCTGGACATTGGGTGCATCACAGTCACTGTTCCCTCAATGTTGAGTCGCCTC
TTGTCCCACAAGCGTGCAGTTCCCTATGGGGCCTGCCTCACACAGGTTTTCTTCTTCCATCTCCTGGTTGGTGTGGACTG
CTTCCTATTGACAGCCATGGCCTATGACCGATTCCTGGCCATCTGCCGGCCCCTCACCTACAGCACCCGCATGAGCCAGA
TGGTTCAGAAGATACTGGTGGCTGTGTCCTGGGCCTGTGCCTTCACCAATGCACTGACCCACACTGTGGCCATATCCACA
CTCAACTTCTGTGGTCCCAATGTGATCAATCACTTCTACTGTGACCTGCCACAGCTCTTCCAGCTCTCTTGCTCCAGCAC
CCAACTCAATGAGCTGCTGCTCTTTGCTGTTGGTTTCATAATGGCAGGTACACCCATGGCTCTCATTGTTACCTCCTATG
CTCACGTGGCAGCTGCAGTTCTAAGAATCCGCTCAGTGGAGGGCAGGAAGAAGGCCTTCTCCACATGTGGCTCCCATCTC
ACTGTGGTTGCCATATTCTATGGTTCTGGTGTCTTTAATTACATGCGACTAGGCTCAACCAAGCTTTCAGATAAGGATAA
AGCTGTTGGAATTTTTAACACTGTCATCAACCCCATGCTGAACCCAGTCATCTACAGCCTCCGGAACCCTGATGTGCAGG
GTGCCCTCTGGCGGGTGATCACAGGGAAGCGGTCACTGACA

Alignment

ORF - retro_mluc_2591 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.41 %
• Parental protein coverage: 80.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MYFFLG-NLSVLDIGCITVTVPSMLSRLLSHKRAVPYGACLTQLFFFHQLAGVDCFLLTAMAYDRFLAIC
          MYFFLG..LSVLDIGCITVTVPSMLSRLLSHKRAVPYGACLTQ.FFFH.L.GVDCFLLTAMAYDRFLAIC
Retrocopy MYFFLG<DLSVLDIGCITVTVPSMLSRLLSHKRAVPYGACLTQVFFFHLLVGVDCFLLTAMAYDRFLAIC

Parental  RPLTYSTRTNHYSVRDVNITLRWAHSFSNFLTHTVAISTLNFCGPNVINHFYCDLPQLFQLSCSSTQLNE
          RPLTYSTR.....V........WA..F.N.LTHTVAISTLNFCGPNVINHFYCDLPQLFQLSCSSTQLNE
Retrocopy RPLTYSTRMSQM-VQKILVAVSWACAFTNALTHTVAISTLNFCGPNVINHFYCDLPQLFQLSCSSTQLNE

Parental  LLLFAVGFIMAGTPMALIVTSYAHVAAAVLRIRSVEGRKKAFSTCGSHLTVVAIFYGSGVFNYMRLGSTK
          LLLFAVGFIMAGTPMALIVTSYAHVAAAVLRIRSVEGRKKAFSTCGSHLTVVAIFYGSGVFNYMRLGSTK
Retrocopy LLLFAVGFIMAGTPMALIVTSYAHVAAAVLRIRSVEGRKKAFSTCGSHLTVVAIFYGSGVFNYMRLGSTK

Parental  LSDKDKAVGIFNTVINPMLNPVIYSLRNPDVQGALWRVITGKRSLT
          LSDKDKAVGIFNTVINPMLNPVIYSLRNPDVQGALWRVITGKRSLT
Retrocopy LSDKDKAVGIFNTVINPMLNPVIYSLRNPDVQGALWRVITGKRSLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2591 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000030303	1 retrocopy	retro_mluc_2591 ,