RetrogeneDB ID: retro_mluc_2547

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430878:47121..49339(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SF3B1
• Ensembl ID: ENSMLUG00000000840
• Aliases: None
• Description: None

Sequence

>retro_mluc_2547
GATGACTTACTTTGACCCTATGTGCATAAGATCCTTGTGGTCATTGAACCATTGCTGATTGATGAAGATTACTATGCTAG
AGTGGAAGGCCGAGAGCTTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGCTACTATGATCTCCACCATGAGACCCGATA
TAGACAATATGGATGAATATGTTCGTAACACAATAGCTAGAGCTTTTGCTGTTGTAGTTCTGCCCTGGGCATTTCTTCAC
TATTGCCCTTCTTAAAAGCTGTGTGCAAAAGCAAGAAGTCCTGGCAAGCGAGACACACTGGTATTAAGATTGTACAGCAG
ATAGCTATTCTGGTGGGCTGTACCATCTTGCCACATCTGAGAAGTTTAGTTGAAATCATTGAACACAGTCTTGTGGATGA
GCAGCAGAAAGTTCGGATCATTAGTGCATTGGCCATCGCGACCTTGGCTGAAGCAGCAACTCCTTATGGTATTGAATCTT
TTGATTCTGTGTTGAAGCCTCTATGGAAGGGTATCCGCCAATACAGAGGAAGGGGTCTGGCTGCCTTCTTAAAGGCTATT
GGGTATCTGACTCCTCTCATGGATGCAGAATATGCCAACTACTATACTAGAGAAGTGATGCTAATCCTTATTCGAGAATT
CCAATCTCCTGATGAAGAAATGAAGACAGTGTGCTGAAGGTGGTAAATCAGTGCTGTGGAACGGATGGTGTAGAAGCAAA
CTACATTAAAATAGAGATTCTTCTTCCCTTTTTAAAACATTTATGGCAACACAGAATGGCTTTAGATAGAAATTATCGAC
AGCTAGTTGGTACTACGGTGGAGTTGGCTAACAAAGTAGGAGCAGCAGAAATTATATCCAGGATCATGGATGATCTGAGA
GATGAAGCTGAACAGTACAGAAAAATGGTGATGGAAACAATTGAGAAGATTATGGGCAACTTGGGAGCAGCAGGTATTGA
TCACAAACTTGAAGAACAGCTGATTGATGGCATTCTTTATGCTTTTCAAGAACAGACTACAGAGGACTCAGTTATGTTGA
ACGGATTTGGCACAGTGGTCAATGCACTTGGCACACGGGTGAAACCTTGCTTGCCTCAGATCTGTGGTACAGTTTTGTGG
TGTTTAAATAACAAGTCCGCAAAAGTAAGGCAACAGGCGGCTGACTTGATCTCTAGAACTGCTGTTGTTATGAAGACTTG
CCAAGAGGAAAAATTGATGGGGCACTTGGGTGTTATTTTGTATGAGTATTTGGGTGAAGAGTACCCTGAAGTACTGGGCA
GCATTCTTGGAGCACTGAAGGCCATTGTGAATGTAATAGGTATGCATAAGATGACTCCACCAATTAAAGATCTGCTGCCT
AGACTCACTCCCATCTTAAAGAACAGGCATGAAAAAGTGCAAGAGAATTGTACTGATCTTGTTGGGCGTATTGCTGACAG
GGGAGCTGAATACGTGTCAGCAAGGGAGTGGATGAGGATTTGCTTTGAGCTTTTGGAGCTCTTAAAAGCTCACAAAAAGG
CTATTCGTAGAGCCACAGTCAACACATTTGGTTATATTGCAAAGGCCATCGGCCCTCATGATGTGTTGGCTACACTTTTA
AACAACCTCAAAGTCCAGGAAAGGCAGAACAGAGTGTGTACCACTGTAGCAATAGCTATCGTCGCTGAAACGTGTTCACC
CTTCACAGTGCTCCCTGCCTTAATGAACGAATACAGAGTTCCTGAACTCAATGTTCACAACGGAGTGTTAAAGTCCCTTT
CCTTCTTGTTCGAATACATCGGCAAAATGGGCAAGGACTACATTTGTGCTTTCACACCATTACTTGAAGATGCCCTAATG
GATAGGGACCTTTTACACAGACAGACGGCTTGTGCGGTGGTGCAACACATGGCACTGGAGGTTTATGGATTTGGTTGTGA
AGATTCGATGAATCACTTGTTGAACTATGTATGGCCCAATGTGTTTGAGACATCTCCCCATGTAATTCAGGCAGTGATGG
GAGCCCTGGAGGGCTTGAGAGTTGCTATTGGGCCACGTAGAATGTTGCAGTATTGTTTACAGGGCTTGTTTCACCCAGCC
CGGAAGGTCAGAGATGTGTATTGGAAAATTTACAACTCCATCTACATTGGTTCACAGGATGCTCTCATAGCACATTACCC
AAGAATCTATAATGATGATAAGAACACCTATATTCGTTATGAACTTGATTATATCTTA

Alignment

ORF - retro_mluc_2547 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.19 %
• Parental protein coverage: 56.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFA
          DDL..PYVHKILVVIEPLLIDEDYYARVEGRE.ISNLAKAAGLATMISTMRPDIDNMDEYVRNT.ARAFA
Retrocopy DDLL*PYVHKILVVIEPLLIDEDYYARVEGRELISNLAKAAGLATMISTMRPDIDNMDEYVRNTIARAFA

Parental  VV-ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR
          VV..SALGI.SLLPFLKAVCKSKKSWQARHTGIKIVQQIAIL.GC.ILPHLRSLVEIIEH.LVDEQQKVR
Retrocopy VV<SSALGISSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILVGCTILPHLRSLVEIIEHSLVDEQQKVR

Parental  TISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLI
          .ISALAIA.LAEAATPYGIESFDSVLKPLWKGIRQ.RG.GLAAFLKAIGYL.PLMDAEYANYYTREVMLI
Retrocopy IISALAIATLAEAATPYGIESFDSVLKPLWKGIRQYRGRGLAAFLKAIGYLTPLMDAEYANYYTREVMLI

Parental  LIREFQSPDEEMKKI-VLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA
          LIREFQSPDEEMK...VLKVV.QCCGTDGVEANYIK.EIL.PF.KH.WQHRMALDR.NYRQLV.TTVELA
Retrocopy LIREFQSPDEEMKTV<VLKVVNQCCGTDGVEANYIKIEILLPFLKHLWQHRMALDR-NYRQLVGTTVELA

Parental  NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVML
          NKVGAAEIISRI.DDL.DEAEQYRKMVMETIEKIMGNLGAA.IDHKLEEQLIDGILYAFQEQTTEDSVML
Retrocopy NKVGAAEIISRIMDDLRDEAEQYRKMVMETIEKIMGNLGAAGIDHKLEEQLIDGILYAFQEQTTEDSVML

Parental  NGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEY
          NGFGTVVNALG.RVKP.LPQICGTVLW.LNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGV.LYEY
Retrocopy NGFGTVVNALGTRVKPCLPQICGTVLWCLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVILYEY

Parental  LGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADSINIFSE
          LGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENC.DLVGRIAD.......
Retrocopy LGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCTDLVGRIADRGAEYVS

Parental  ISIWMLNMCQLLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE
          ...WM.....LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE
Retrocopy AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE

Parental  TCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAV
          TCSPFTVLPALMNEYRVPELNV.NGVLKSLSFLFEYIG.MGKDYI.A.TPLLEDALMDRDL.HRQTA.AV
Retrocopy TCSPFTVLPALMNEYRVPELNVHNGVLKSLSFLFEYIGKMGKDYICAFTPLLEDALMDRDLLHRQTACAV

Parental  VQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKV
          VQHM.L.VYGFGCEDS.NHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP.RMLQYCLQGLFHPARKV
Retrocopy VQHMALEVYGFGCEDSMNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPRRMLQYCLQGLFHPARKV

Parental  RDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
          RDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Retrocopy RDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2547 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000840	5 retrocopies	retro_mluc_1952, retro_mluc_2547 , retro_mluc_2590, retro_mluc_404, retro_mluc_405,