RetrogeneDB ID: retro_mluc_253

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429927:656871..658305(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026338
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SRSF11
• Ensembl ID: ENSMLUG00000006203
• Aliases: None
• Description: serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782]

Sequence

>retro_mluc_253
ATGAGCAACACTACCATCGTCCCCAGCACTGCGGGCCCTGGCCCCAGTGGCAGGCAGGGTGGCGGAGGCAGCGGTGGCGG
CACCCTGGTAATCCAGGTGACTAATGTCTCCCCGAGTGCTAGCTCTGAGCAGATGCTGACCCTCTTCGGTTTCCTAGGCA
AGATCGAGGAACTGCGCCTCTTCCCGCCGGATGGTTCACCTTTGCTGGCTTCATCCCGTGTCTGCTTTGTTAAATTCCAT
GATCCGGACTCAACAGTTGTGGCACAGCATCTAACAAACACTGTATTCATTGACAGAGCACTGATAGTCGTACCATATGC
AGAAGGAGTTATTCCTGATGAGACTAAGGCTTTGTCTCTGTTGGCACCAGCTGATGCAGTGGCAGGTCTTCTGCCTGGTG
GTGGACTCCTGACTACTCCTAACCCACTTACCCAGATTGGCGCTGTTCCATTGGCTGCTTTGGGAGCTCCTACTCTTGAT
CCTGCCCTTGCTGCACTTGGGCTTCCTGGAGCAAACTTGAATTCTCAGTCTCCTGTTGCAGATCAGTTGCTGAAGCTTAT
GAGTACTGTTGATCCCAAGTTGAATCATGTAGCTGCTGGTCTTGTTTCACCAAGTCTGAAATCAGATACCTCTAGTAAAG
AAATAGAGGAAGCCATGAAGAAAGTTCGAGAAGCACAGTCCCTAATATCTGCTGCCATAGAACCAGATAAAAAAGAAGAA
AAACGAAGGCACTCAAGATCATGCTCTAGGAGGAGGAGGAGGACTCCTTCATCTTCTAGACACAGGCAGTCAAGAAGCAG
ATCTAGAAGGAGGTCCCTTTCTAAGTCAAGGAGTAGGCGACGATCCAAAAGTCCCAGACGGAGAAGATCTCATTCCAGAG
AGAGAGGTAGAAAGTCAAGGAGCACATCCAAAAACAGAGACAAAAAGAAAGAAGACAAAGAAAAGAAACGTTCCAAAACA
CCACCAAAAAGGTATAGCACAGCCAGACCGCCCAGAAGTGCAAGCAGAGAGAGACGACGTCGACGAAGCAGGAGTGGCAC
AAGATCTCCTAAAAAGCCCAGGTCTCTGAAAAGAAAATTGTCTTGCTCACCGTCCCCTAGGAGGCATAAAAAGGAGAAGA
AAGATAAAGACAAAGAAAGAGGCAGAGATGAACGAGAACGATCAACAAGCAAGAAGAAGAAAAGTAAAGATAAAGAAAAG
GATGGGGAAAGAAAATCTGAAAGTGATAAAGATGTAAAAGTTACATGGGATTATGATGAAGAGGAACAGGGGTATGACAG
TGAGAAAGAGAAAAAAGAGGAGAGGAAACCAACAGAACCAGTTTCCCCAAAAACAAAAGAATGTTCTGTGGAAAAGGAAA
ATGGTGATCCCCTGAGAGAATCCAAAGTGAATGGTGATGATCATCATGAAGAAGACATGGATATGAGTGACTGA

Alignment

ORF - retro_mluc_253 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.91 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSNTTVVPSTAGPGPSGGPGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLP
          MSNTT.VPSTAGPGPSG..GGGG.GGG.T.VIQVTNVSPSASSEQM.TLFGFLGKI.ELRLFPPD.SPL.
Retrocopy MSNTTIVPSTAGPGPSGRQGGGGSGGG-TLVIQVTNVSPSASSEQMLTLFGFLGKIEELRLFPPDGSPLL

Parental  VSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPT
          .SSRVCFVKFHDPDS.VVAQHLTNTVF.DRALIVVPYAEGVIPDETKALSLLAPA.AVAGLLPGGGLL.T
Retrocopy ASSRVCFVKFHDPDSTVVAQHLTNTVFIDRALIVVPYAEGVIPDETKALSLLAPADAVAGLLPGGGLLTT

Parental  PNPLTQIGAVPLAALGAPTL----AALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSD
          PNPLTQIGAVPLAALGAPTL....AALGLPGANLNSQS..ADQLLKLMSTVDPKLNHVAAGLVSPSLKSD
Retrocopy PNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQSPVADQLLKLMSTVDPKLNHVAAGLVSPSLKSD

Parental  TSSKEIEEAMKRVREAQSLISAAIEPDPDKKEEKRRHSRSRSRSRRRRTPSSSRHSRRSRSRSRRRSHSK
          TSSKEIEEAMK.VREAQSLISAAIE..PDKKEEKRRHSRS.SR.RRRRTPSSSRH.R.SRSRSRRRS.SK
Retrocopy TSSKEIEEAMKKVREAQSLISAAIE--PDKKEEKRRHSRSCSR-RRRRTPSSSRH-RQSRSRSRRRSLSK

Parental  SRSRRRSKSPRRRRSHSRERGRRSRSTSKNRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRS
          SRSRRRSKSPRRRRSHSRERGR.SRSTSKNRDKKKEDKEKKRSKTPPK.YSTAR..RSASRERRRRRSRS
Retrocopy SRSRRRSKSPRRRRSHSRERGRKSRSTSKNRDKKKEDKEKKRSKTPPKRYSTARPPRSASRERRRRRSRS

Parental  GTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERGRDERERSTSKKKKSKDKEKDRERKSESDKDAKQ
          GTRSPKKPRS.KRKLS.SPSPRRHKKE.KKDKDKERGRDERERSTSKKKKSKDKEKD.ERKSESDKD.K.
Retrocopy GTRSPKKPRSLKRKLSCSPSPRRHKKE-KKDKDKERGRDERERSTSKKKKSKDKEKDGERKSESDKDVK-

Parental  VTRDYDEEEQGYDSEKEKKEEKKPTEPVSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD
          VT.DYDEEEQGYDSEKEKKEE.KPTEPVSPKTKECSVEK..GD.LRESKVNGDDHHEEDMDMSD
Retrocopy VTWDYDEEEQGYDSEKEKKEERKPTEPVSPKTKECSVEKENGDPLRESKVNGDDHHEEDMDMSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_253 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006203	2 retrocopies	retro_mluc_1027, retro_mluc_253 ,