RetrogeneDB ID: retro_mluc_248

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429778:2457635..2459462(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000009577
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002123
• Aliases: None
• Description: None

Sequence

>retro_mluc_248
ATGGCGGCACTGAAGGAGAATCAGAGCTACAGGCTGTCGTGCGGGCGGGTGAGTGACAGCAGCAAGGTGTCCATGTTTCA
CGTGAAGCTCACCGACAGTGCCCTGAGAGCCTTTGAGACCTACTGCGACAGCCAGGATTCTGTTTCACTGAGACCATCAA
TTCGATTTCAAGGAAGCCAAGGGCACATCTCCATCCCCCATCCAGACTGCCCCTCAGAGGCTCAGATCTTCTCCTTCTAC
CTCTCCAACATCGGCTGTGACAGCTCCCAGGGCAGTTTCAACTGCACCCAGCAGTACTTCTCCAGCCATGGGGATATACA
CCTGGACTGCTTGGGTAGCATCCAGGACAAAATCACAGTGTGTGCCACCGATGACTCCTACCAGAAGGCACGGCAGAGCA
TGGCACAAGCCAAGGAGGAGACACGGAGTCAGGGTGCCATCGTCATCAAGCCCGGAGGCCACTCCCTGGGCAAGAAGGTT
CAGTTTAGGAAACCAGCCCCACAAGTGACGGATACTGTGCCCTCCCGGAAGTGGGGGACCCTCATTAACCTGGCAAATGT
CCTCAAGAAAAGTGGTGTTAGCAGGGGCGTTGGGGTATCTCAGAGGCCTTTCCGTGACCGGGTGCTACATCTTCTGGCAC
TGAGGCCCTACCGGAAGGCTGAACTGCTGCTGCGGCTACAGAAGGATGGCCTGGCGCAGGCAGACAAGGACATGCTGGAC
AGCCTCCTCCAACAGGTGGCCAACATGAATACCAAGGATGGTACTTGGACACTGAAGGACTGTATGTACAAGGATGTGCA
AAAGGACTGGCCTGGCTACTCAGAGGTGGACCAGCAGCTGCTAAAGCGCATGCTTATCAGAAAGCTGTGCCAGCCACAGA
GTGCAGGTGGCCTCCCTGGAGACCCTGCTGCCGCCAGCCCCCCAAGAGAGCATGGGAGCTCAGTCTTACCCCCCCAGAAA
CGTCCTCAGCCTCCTGGTTTCATTGACCCCCTGGCCAAGAAGAAACCAAGGATATCGCACTTCACCCAGAGAGCTCAGCC
CGCCGCCAATGGGAAGCTGAATGTGCCCCATGGCCAGGAGGCCCTACTGCCCACCCTTGGCCCACTGGCGGGCACAGATG
CCCACCTACCCCCACGGCTGGATCCTCCGAGGGCACATGACCCTCTGGCTGATGTCAGCAATGACCTGGGCCACAGTGGC
GGGGACTGTGATGACAGGGAAATGGCCACCCCAGCCCCCACTTCCTGCCTTAGCCTTCCTCTGCTGAAGGACTGTGCCCA
GCCCAGCAGGCCCCACGGTGGCTCGTCTTGCGGCAAGTACAAGAAGAAATCCAACAAGCACAAGGACAAGAATAGGGCAG
CTGGGGACAGGCATCGAGCCAGGCCACCAGAACTTGTGTCTGGCTCCCTTGGAACCCTGCCAGTCGACCTGGGTTTAAAT
GGGACCTGCAACAGCTCAAGCGTCCCCACGTCAACTTCAGAGACACCAGACTACTTGCTAAAATATGCCACTATCTCCTC
CTCAGAGCAGCGCCAGAGCTACGAGAATGACTTCAACGCCGAGTTCGGTGAGTACCAAGACCTGCACACCCGCATTGAGC
AGGTCATACGGCGGTTCACGCAGCTGGACGCCCAGCTCCGACAGCTCTCCCAGGGCTCCGAAGAGTACAAGACTACTTGT
GGGCAGATTTTACAGGAATATCGCAAAATCAAAAAGACCAACTACAGCCAGGAGAAGCACCGGTGTGAGTACCTGCACAG
CAAGCTGGCCCACATCAAGAGGCTCGTTGCTGAGTATGACCAACGGCGGCTGCAGCCTTGGCCCTAG

Alignment

ORF - retro_mluc_248 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.89 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SVSLRPSIRFQGSQGHIAIPQPDCPSEARIFSFYLSNIGRDSPQGSFDCIQQYLSSHGDIHLDCLGSIQD
          SVSLRPSIRFQGSQGHI.IP.PDCPSEA.IFSFYLSNIG.DS.QGSF.C.QQY.SSHGDIHLDCLGSIQD
Retrocopy SVSLRPSIRFQGSQGHISIPHPDCPSEAQIFSFYLSNIGCDSSQGSFNCTQQYFSSHGDIHLDCLGSIQD

Parental  KITVCATDDSYQKARQSMAQAEEETRSRSTIVIKPGGRYLGKKVQFRKPAPGATETVPSRKRATPINLAN
          KITVCATDDSYQKARQSMAQA.EETRS...IVIKPGG..LGKKVQFRKPAP..T.TVPSRK..T.INLAN
Retrocopy KITVCATDDSYQKARQSMAQAKEETRSQGAIVIKPGGHSLGKKVQFRKPAPQVTDTVPSRKWGTLINLAN

Parental  AIKKSGVSGGGGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLAQADKDTLDSLLQQVANVNTKDGTC
          ..KKSGVS.G.GVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLAQADKD.LDSLLQQVAN.NTKDGT.
Retrocopy VLKKSGVSRGVGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLAQADKDMLDSLLQQVANMNTKDGTW

Parental  TLKDCVYKDVQKDWPGYSEGDQQLLKRMLVRKLCQPQSAGGLPGDPAAASPPREHGSSVSPPQKRPQPPD
          TLKDC.YKDVQKDWPGYSE.DQQLLKRML.RKLCQPQSAGGLPGDPAAASPPREHGSSV.PPQKRPQPP.
Retrocopy TLKDCMYKDVQKDWPGYSEVDQQLLKRMLIRKLCQPQSAGGLPGDPAAASPPREHGSSVLPPQKRPQPPG

Parental  FIDPLANKKPRISHFTQRAQPAANGKLNVPHGREALLPTLGPLAGTDAHLPPRLDPPRAHDPLADVSNDL
          FIDPLA.KKPRISHFTQRAQPAANGKLNVPHG.EALLPTLGPLAGTDAHLPPRLDPPRAHDPLADVSNDL
Retrocopy FIDPLAKKKPRISHFTQRAQPAANGKLNVPHGQEALLPTLGPLAGTDAHLPPRLDPPRAHDPLADVSNDL

Parental  GHSGRDCDHGEMATPAPTSCLSLPLLKDCAQPSRPHGGSSRGKSKKKSKKHKDKDRAAGDRHRARPPELV
          GHSG.DCD..EMATPAPTSCLSLPLLKDCAQPSRPHGGSS.GK.KKKS.KHKDK.RAAGDRHRARPPELV
Retrocopy GHSGGDCDDREMATPAPTSCLSLPLLKDCAQPSRPHGGSSCGKYKKKSNKHKDKNRAAGDRHRARPPELV

Parental  SGSLGAPPVNLGLNGTCNSSSVPTSTSETPDYLLKYATISSSEQRQSYKNDFNAEYSEYRDLHARIEQIT
          SGSLG..PV.LGLNGTCNSSSVPTSTSETPDYLLKYATISSSEQRQSY.NDFNAE..EY.DLH.RIEQ..
Retrocopy SGSLGTLPVDLGLNGTCNSSSVPTSTSETPDYLLKYATISSSEQRQSYENDFNAEFGEYQDLHTRIEQVI

Parental  RRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQL
          RRFTQLDAQLRQLSQGSEEY.TT.GQILQEYRKIKK..TNYSQEKHRCEYLHSKLAHIKRL.AEYDQR.L
Retrocopy RRFTQLDAQLRQLSQGSEEYKTTCGQILQEYRKIKK--TNYSQEKHRCEYLHSKLAHIKRLVAEYDQRRL

Parental  QPWP
          QPWP
Retrocopy QPWP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_248 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002123	1 retrocopy	retro_mluc_248 ,
Myotis lucifugus	ENSMLUG00000003819	3 retrocopies	retro_mluc_2539, retro_mluc_2558, retro_mluc_2559,
Tursiops truncatus	ENSTTRG00000010436	1 retrocopy	retro_ttru_1482,