RetrogeneDB ID: retro_mluc_2479

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430505:204668..205010(+)
• Located in intron of: ENSMLUG00000004504

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: POLR2J
• Ensembl ID: ENSMLUG00000010467
• Aliases: None
• Description: None

Sequence

>retro_mluc_2479
ATGAACGCCCCTCCAGCCTTCAAGCATTCTTGCTGTTCGGAAGCGAGAAGATCATCATTAACAAGGACACCAAGGTATTC
AATGCCTGTTTTTTCACCATCAACGAAGATCATACACTAGGAAACATTATTAAATCACAGCTGTTGAAGGACCCACAGGT
GCTGTTTGCTGGCTACAAAGTCTCCTACCCCTTGGAGCCCAAAATCACCTCCGTGTGCAGACCACACCAGACTACAGGCC
CCAGCAGGCCTTCGCCAGTGCCACCCAGGCCTCATCAGCAAGCTCTTTCTGCTGGAAGAGTGATTCCAGGTGGCCATCAA
AGACAAGCAAGAAGGAACTGAA

Alignment

ORF - retro_mluc_2479 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.83 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MNAPPAF-ESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEH
          MNAPPAF...FLLF.G..KI.INKDTKV.NAC.FTIN.EDHTLGNIIKSQLLKDPQVLFAGYKV..PLE.
Retrocopy MNAPPAF<QAFLLF-GSEKIIINKDTKVFNACFFTIN-EDHTLGNIIKSQLLKDPQVLFAGYKVSYPLEP

Parental  KII-IRVQTTPDYSPQEAFTNAI-TDLISELSLLEERFRVAIKDKQEGIE
          KI...RVQTTPDY.PQ.AF..A....LIS.L.LLEE.F.VAIKDKQEG.E
Retrocopy KIT<LRVQTTPDYRPQQAFASAT<PGLISKLFLLEE*FQVAIKDKQEGTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2479 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000021507	1 retrocopy	retro_lafr_361,
Myotis lucifugus	ENSMLUG00000010467	2 retrocopies	retro_mluc_2479 , retro_mluc_2499,
Sus scrofa	ENSSSCG00000024080	1 retrocopy	retro_sscr_53,
Ictidomys tridecemlineatus	ENSSTOG00000006377	1 retrocopy	retro_itri_519,