RetrogeneDB ID: retro_mluc_2476

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430490:13171..14562(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029872
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004090
• Aliases: None
• Description: None

Sequence

>retro_mluc_2476
ACTTGGAAGTCTGCTGGGAAAACTTATTTACTACGTATGTGCAATGATCTCTTAAGAAGATTATCCAAAGCCCAGCACAC
ACTTTTCCGTGCACGGATTCAACTCTTTTTGGCCAGGCTGTTCCCTTTACCTGAGAGATCCGGTCTTAACTTGCAGGGTC
AGTTTAATCTGGAAAATGTCACTGTTTTCAATACCAATGAGCAGGAAAGCCCCTTGGGTCAGAAGCACGCTGAAGACGGA
GGAGAAGGAATGGACGTAGACGAAGGTGACATGGGTGATGATGAAGCTCCAACAACTTGCTCCATCCCAATGGATTACAG
CCTGTATCGCAAATTCTGGTCCCTTCAGGATTACTTCAGGAACCCCGTGCGATGCTATGAGAAGATTTCATGGAAAACTT
TCCTCAAGTACTCAGAAGAAGTCCTGGCTGTTTTCAAGAATTATAAATTAGATGATACTCAGGCCTCAAGAAAAAAGACG
GGAGAATTAAGGACAGGAGGAGAACATGTATATGCTGCAAAATTTTTAACAAGTGAAAAGTTGCTGGGTTTACAGCTGAG
CGACAGTAACTTTCGCCGACAGATTCTCCTGCAGTATCTCATTTTATTCCAATATCTCAAGGGACAGGTGAAATCCAAAA
GTTCAAACCATGTTTTAACTGATGAGCAGTCACTCTGGATTGAAGGCACTACAAAATCAGTTTATCAACTGCTCTCTGAA
AACCCACCCGATGGAGAGAGATTTTCCAAGATGGTAGAGCATATATTAACCACTGAAGAAAACTGGAACAAGTGGAAAAA
TGAAGGCTGCCCAAGTTTTGTGAAGGAAAGAACATCAGATACTAAGCCGACGAGAGCAGTACGAAAGAGAGCCGCACCAG
AGGACTTCCTGGGGCAAGGGCCCAGCAAAAAGATTCTGAAGGGAAACGAGGCGTTAACAAGCCTTTGGGATCTCTGCCCG
GATAATATGGAAGCTTGTAAATCAGACCCCAGAGGCTATATGCCAACTTTGGAGGAATTCTTTGAAGAAGCCATTGAACA
GGCAGACCCGGAAAGCATGATTGAAAACGAATATAAGGTTGTGAACAACCCAAATTATGGTTGGAGAGCCCTGAGACTGT
TAGCACGGAGAAGCCCTCACTTCTTCCAGCCAACCAAACAACAGTTCAAAAGTTTGCCAGAATATCTGGAACACATGGTA
CTAAAGCTAGCAAAGGAATCACCACCTCCTTCTGAAGACATAAAAACGGGTGAGGGTGAAGATGAGGAAGATAATGATGC
TGTACCGAAGGGAAATGAAGGCCCTGATGCTCGCCGAGACAAAGCTGTAACAGGGGAAAAATAGAGATATTTGCCAACAA
ATTGGGTGAACAATGGAACATTCTGGCTCCT

Alignment

ORF - retro_mluc_2476 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.34 %
• Parental protein coverage: 70.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSVGLNLQSQFNLENVTVFNTNEQE
          T..SAGK.YLLRMCNDLLRRLSK.Q.T.F..RIQLFLARLFPL.E.S.GLNLQ.QFNLENVTVFNTNEQE
Retrocopy TWKSAGKTYLLRMCNDLLRRLSKAQHTLFRARIQLFLARLFPLPERS-GLNLQGQFNLENVTVFNTNEQE

Parental  STLGQKHAEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSE
          S.LGQKHAED..EGMDV.EG.MGDDEAPTTCSIP.DY.LYRKFWSLQDYFRNPV.CYEKISWKTFLKYSE
Retrocopy SPLGQKHAEDGGEGMDVDEGDMGDDEAPTTCSIPMDYSLYRKFWSLQDYFRNPVRCYEKISWKTFLKYSE

Parental  EVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQ
          EVLAVFK.YKLDDTQASRKK..EL.TGGEHVY.AKFLTSEKL..LQLSDSNFRR.ILLQYLILFQYLKGQ
Retrocopy EVLAVFKNYKLDDTQASRKKTGELRTGGEHVYAAKFLTSEKLLGLQLSDSNFRRQILLQYLILFQYLKGQ

Parental  VKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTS
          VK.KSSN.VLTDEQSLWIE.TTKSVYQLLSENPPDGERFSKMVEHIL.TEENWN.WKNEGCPSFVKERTS
Retrocopy VKSKSSNHVLTDEQSLWIEGTTKSVYQLLSENPPDGERFSKMVEHILTTEENWNKWKNEGCPSFVKERTS

Parental  DTKPTRAVRKRTAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSDTREYMPTLEEFFEEAIEQAD
          DTKPTRAVRKR.APEDFLG.GP.KKIL.GNE.LT.LW.LCPDNMEACKSD.R.YMPTLEEFFEEAIEQAD
Retrocopy DTKPTRAVRKRAAPEDFLGQGPSKKILKGNEALTSLWDLCPDNMEACKSDPRGYMPTLEEFFEEAIEQAD

Parental  PESMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEIKTGED
          PESM.ENEYK.VNN.NYGWRALRLLARRSPHFFQPT.QQFKSLPEYLE.MV.KLAKE.PPPSE.IKTGE.
Retrocopy PESMIENEYKVVNNPNYGWRALRLLARRSPHFFQPTKQQFKSLPEYLEHMVLKLAKESPPPSEDIKTGEG

Parental  EDEEDNDALLKENESPDARRDKPVTGE-QIEIFANKLGEQWKILAP
          EDEEDNDA..K.NE.PDARRDK.VTGE..IEIFANKLGEQW.ILAP
Retrocopy EDEEDNDAVPKGNEGPDARRDKAVTGE<KIEIFANKLGEQWNILAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2476 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004090	5 retrocopies	retro_mluc_2441, retro_mluc_2473, retro_mluc_2474, retro_mluc_2475, retro_mluc_2476 ,