RetrogeneDB ID: retro_mluc_2437

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430399:51568..52594(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNGTT
• Ensembl ID: ENSMLUG00000003302
• Aliases: None
• Description: None

Sequence

>retro_mluc_2437
TGTGCCCTTTTGGTGGAGAAAATGGATTGGAGTACTGAAGCGGCAGTTGCCACTTTTGCTCAAGCAAGACCACCAGGAAT
TTATAAGGGTGATTATTTGAAAGAACTCTTTCGTCGCTATGGTGATATAGAGGAAGCACCAGCCCCACCTGAATTGCCAT
ATTGGTGTTTGGAGGATGATGAAGAGGAAGATGAGGATAAGGATGGAAAGAAGGAACCAGAACCTGGGCCAAGCGCCTCC
TTTAGCAAAAGGAGAAAAGAACGGTTAAAACTGGGTGCTATTTTCTTAGAAGGTATAACGGTTAAAGGCGTAACTCAAGT
AACAACTCAACCGAAGTTAGGAGAAGTACAGCGGAAGTGTTGGCAATTCTGTGGCTGGGAAAGGTCTGGATTCCCTGGAG
CACAGCCTGTTTACATGGACAAGCAAAATATTAAACTTTTAGAGCAGAATCCATATAAAGTAAGCTGGAAAGCAGATGGT
ACTCAGTATATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGGTAGAGATAATTCAGTGTTCCATGTTTCAAA
TCTGGAACTCCCATTTCGTAAAGATCTCCGTATACATTTATCAAATACTCTGTTGGATGGGGAAATGGTTATTGATAAAG
TAAATGGACAAGCTATACCTAGATATTTGATTTATGACATAATTAAATTCAATGCACAGCGAGTTGGAGATTGTGATTTT
AATGTTCGTCTTCAGTGTATAGAATGAGAAATAATAAATCCTCGACATGAAAAAATGAAGACTGGGCTCATTGACAAAAC
ACAGGAACCATTTAGTGTCAGAAATAAGCCATTTTTTGACATTTATACTTCAAGAAAGCTACTTGAAGGAAATTTTGCAA
AAGAACTTAGCCATGAAATGGATGGACTTATTTTTCAGCCTACTGGAAAATACAAACCTGGTCGATGTGATGATATTTTA
AAATGGAAGCCTCCCAGTCTGAATTCTGTGGATTTTCACCTAAAGATAACAAGAATGGGAGGAGAA

Alignment

ORF - retro_mluc_2437 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.57 %
• Parental protein coverage: 71.4 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPAPPVLPDWCFEDDEEEDEDEDGK
          CA.LVEKMDWS.EAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPAPP.LP.WC.EDDEEEDED.DGK
Retrocopy CALLVEKMDWSTEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPAPPELPYWCLEDDEEEDEDKDGK

Parental  KEPEPGSSASFGKRRKERLKLGAIFLEGITVKGVTQVTTQPKLGEVQQKCRQFCGWEGSGFPGAQPVSMD
          KEPEPG.SASF.KRRKERLKLGAIFLEGITVKGVTQVTTQPKLGEVQ.KC.QFCGWE.SGFPGAQPV.MD
Retrocopy KEPEPGPSASFSKRRKERLKLGAIFLEGITVKGVTQVTTQPKLGEVQRKCWQFCGWERSGFPGAQPVYMD

Parental  KQNIKLLEQNPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRIHLSNTLLDGEMI
          KQNIKLLEQNPYKVSWKADGT.YMMLIDGTNEVFMI.RDNSVFHVSNLE.PFRKDLRIHLSNTLLDGEM.
Retrocopy KQNIKLLEQNPYKVSWKADGTQYMMLIDGTNEVFMIGRDNSVFHVSNLELPFRKDLRIHLSNTLLDGEMV

Parental  IDKVNGQAVPRYLIYDIIKFNAQPVGDCDFNVRLQCIEREIINPRHEKMKTGLIDKTQEPFSVRNKPFFD
          IDKVNGQA.PRYLIYDIIKFNAQ.VGDCDFNVRLQCIE.EIINPRHEKMKTGLIDKTQEPFSVRNKPFFD
Retrocopy IDKVNGQAIPRYLIYDIIKFNAQRVGDCDFNVRLQCIE*EIINPRHEKMKTGLIDKTQEPFSVRNKPFFD

Parental  IYTSRKLLEGNFAKEVSHEMDGLIFQPTGKYRPGRCDDILKWKPPSLNSVDFRLKITRMGGE
          IYTSRKLLEGNFAKE.SHEMDGLIFQPTGKY.PGRCDDILKWKPPSLNSVDF.LKITRMGGE
Retrocopy IYTSRKLLEGNFAKELSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFHLKITRMGGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2437 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000003302	1 retrocopy	retro_mluc_2437 ,
Ochotona princeps	ENSOPRG00000000916	3 retrocopies	retro_opri_523, retro_opri_978, retro_opri_979,