RetrogeneDB ID: retro_mluc_2381

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430279:152884..153673(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000016457
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RAD9A
• Ensembl ID: ENSMLUG00000005102
• Aliases: None
• Description: None

Sequence

>retro_mluc_2381
GACTGTGAGTTCCTGCAGGCTGTCTTCGACCCAGCCTCGTGCCCCTATCTGCTCCGGGCCCCAGCAAAGCTTCTGGGGGA
GGCTGTTCTGCCCTTCCCCCCTGCACTGGCTGAAGTGACGCTGGGCATTGGCCATGGTCGCAGGGTCATCCTGCGAAGCT
ACCAGGAGGAAGAGGCAGACAGCACCATCAAAGCCATGGTGACTGAGATGAGCATTGGGCAGGAGGATTTCCAGCAGCTG
CAGGCCGAAGAAGGGGTGGCCATCACTTTCTGCCTCAAAGAATTCCGGGGGCTCCTGAGCTTCGCAGAGTCAGCAAACTT
ATCTCTTAGCATTCACTTCGATGCTCCCGGCAGGCCAGCCATCTTTGCCATCAAGGACTCTCTGCTGGATGGCCACTTTG
TTCTGGCTACACTCTCGGAGCCAACCCCAAACTCCCAGGACCTGCACTTCCCAGAGCCCTGCCAGCCGGCGCCTCAGCGC
CAGGCCCATAGCACCCCCCAGCCGGATGACTTTGCCAGTGACGACATTGACTCTTACATGATCGCCATGGAAACCACTGT
GGGCAGTGAGAGCTCAAGAACACTCCCCTCCATCTCCCTCTCACCTGGCCTCCAGCCTCCCTGCAGCTCCGAAGGGGAAG
AAGATGAAGCTGAGGCTGAGCTCAGTACAGTGCCTGGGACCCCCCCACCCAAGAAGTTCCGCTCACTGTTCTTTGGCTCC
ATCCTGGCTCCTGCACACTCCCCGCTGGGCCCCAGCCCTGTGTTGGCTGAAGACAGTGAGGGTGAAGGC

Alignment

ORF - retro_mluc_2381 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.24 %
• Parental protein coverage: 67.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DCESLQAVFDPASCPYLLRAPAKLLGEAVLPFPPALAEVTLGIGHGRRVILRSYQEEEADSTIKAMVTEM
          DCE.LQAVFDPASCPYLLRAPAKLLGEAVLPFPPALAEVTLGIGHGRRVILRSYQEEEADSTIKAMVTEM
Retrocopy DCEFLQAVFDPASCPYLLRAPAKLLGEAVLPFPPALAEVTLGIGHGRRVILRSYQEEEADSTIKAMVTEM

Parental  SIGQEDFQQLQAEEGVAITFCLKEFRGLLSFAESANLSLSIHFDAPGRPAIFAIKDSLLDGHFVLATLSE
          SIGQEDFQQLQAEEGVAITFCLKEFRGLLSFAESANLSLSIHFDAPGRPAIFAIKDSLLDGHFVLATLSE
Retrocopy SIGQEDFQQLQAEEGVAITFCLKEFRGLLSFAESANLSLSIHFDAPGRPAIFAIKDSLLDGHFVLATLSE

Parental  PTPNSQDLHFPEPCQPAPQRQAHSTPQPDDFASDDIDSYMIAMETTVGSESSRTLPSGSLSPGLQPPCSS
          PTPNSQDLHFPEPCQPAPQRQAHSTPQPDDFASDDIDSYMIAMETTVGSESSRTLPS.SLSPGLQPPCSS
Retrocopy PTPNSQDLHFPEPCQPAPQRQAHSTPQPDDFASDDIDSYMIAMETTVGSESSRTLPSISLSPGLQPPCSS

Parental  EGEEDEAEAELSTVPGTPPPKKFRSLFFGSILAPAHSPLGPSPVLAEDSEGEG
          EGEEDEAEAELSTVPGTPPPKKFRSLFFGSILAPAHSPLGPSPVLAEDSEGEG
Retrocopy EGEEDEAEAELSTVPGTPPPKKFRSLFFGSILAPAHSPLGPSPVLAEDSEGEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2381 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005102	1 retrocopy	retro_mluc_2381 ,