RetrogeneDB ID: retro_mluc_2340

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430229:413286..414089(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: POFUT1
• Ensembl ID: ENSMLUG00000008418
• Aliases: None
• Description: None

Sequence

>retro_mluc_2340
AAGCGGGGAGGATACTGCTTTGAAGGGGCAGCCCAGAGAAGTCCTGATAAAAAGACCTGCCCAATGAAGGAAGGAAACCC
CTTTGGCCCATTTTGGGATCAGTTTCATGTGAGTTTCAACAAGTCGAAGCTTTTTTCAGGCATTTTCTACAGAGCTTTCT
ACAAAGACCAGTGGATCCAGAGATTTTCTCCAAAGGAACATCCAGTGCTGGCCTTGCCAGGGGCCCCAGCCCAGTTCCCC
ATCCTGGAAGAGCATAGGCCACTGCAGAAGTACATGGTATGGTCAAAGGAGATGGTGAAGACAGGAGAGGCCTGATCCAC
ACCCACCTCATCCGGCTCTATGTCGCTATTCACCTACGCATTGGCTCCTACTAGAAGAATGCCTGTGCCATGCAGAAGGA
TGGGACTGCGGACTCCCACTTCATGGCCTCTCTGCAATATGTGGGCTATAGCCGAAACTCAGCGACCCCTCTCACCATGA
CTATGTGCCTCCCAGACCTGAAGGAAATCAAGCAGGCCGTGGAGCTCTGGGTGTGGGCTCAAAACGCCAGGTCTGTCTAC
ATTGCCACGGATTCTGAGAGTTATGTGCCAGAGATCCAGCAGCTCCTCAAAGGGAAGGTGAAGGTGGTGAGGCTGCAGCC
TGAGGTGGCCCAGGTCGACCTGTACATCCTTGGCCAAGCTGACCACTTTATTGGCAACTGTGTCTCCCCCTTTTCCACGT
TCGTGAAATGGGAACGAGACCTCATGGGGAGGCCATCCTCCTTCTTTGGCATGAACTGGCCCCCACAATTTCGGGACGAG
TTC

Alignment

ORF - retro_mluc_2340 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.73 %
• Parental protein coverage: 68.54 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDHFHVSFNKSELFSGISYSASYKDQWIQRFSPEEHPVL
          KR..YCFE.AAQRSPDKKTCPMKEGNPFGPFWD.FHVSFNKS.LFSGI.Y.A.YKDQWIQRFSP.EHPVL
Retrocopy KRGGYCFEGAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSKLFSGIFYRAFYKDQWIQRFSPKEHPVL

Parental  ALPGAPAQFPVREEHRRLQRYMVWSDEMVKTGEA-LIHTHLIQPYVAIHLRIGSDWKNACAMLKDGTADS
          ALPGAPAQFP..EEHR.LQ.YMVWS.EMVKTGEA.LIHTHLI..YVAIHLRIGS..KNACAM.KDGTADS
Retrocopy ALPGAPAQFPILEEHRPLQKYMVWSKEMVKTGEA<LIHTHLIRLYVAIHLRIGSY*KNACAMQKDGTADS

Parental  HFMASPQCVGYSRNSATPLTMTMCLPDLKEIKRAVEVWVWAQRARSVYIATDSESYVPEIQQLLKGKVKV
          HFMAS.Q.VGYSRNSATPLTMTMCLPDLKEIK.AVE.WVWAQ.ARSVYIATDSESYVPEIQQLLKGKVKV
Retrocopy HFMASLQYVGYSRNSATPLTMTMCLPDLKEIKQAVELWVWAQNARSVYIATDSESYVPEIQQLLKGKVKV

Parental  VSLQPEVAQIDLYILGQADHFIGNCVSSFSAFVKRERDLMGRTSSFFGMDWPPQLRDEF
          V.LQPEVAQ.DLYILGQADHFIGNCVS.FS.FVK.ERDLMGR.SSFFGM.WPPQ.RDEF
Retrocopy VRLQPEVAQVDLYILGQADHFIGNCVSPFSTFVKWERDLMGRPSSFFGMNWPPQFRDEF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2340 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000008418	1 retrocopy	retro_mluc_2340 ,