RetrogeneDB ID: retro_mluc_231

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:3395974..3397189(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024453
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002542
• Aliases: None
• Description: None

Sequence

>retro_mluc_231
CGCGTGGGAGCCACCATGGCGCACATCACTATTAACCAGTACCTGCAGCAGGCCTATGAAGCAATTGAAACCAGAGATGG
GGAATCCTTTGCAGAGCTGGTGTCTTTCAAGTATCCTCATGTTGCCAACCCGCGGCTTCAGTTGGCCTCTCCAGAAGAGA
AGTGTCAACACGTTCTGGAACCCCCTTATGCTGAAATGTTTGCAGCTCATTTAAGGTGCACGTACGCAGCGGGGAACCAC
GACTTCACAGAGGCATACACATGCCAGACTGTCATCGTCCAATCATTCCTGCGGGCGTTTCAGGCCCACAAAGGAGAAAA
ATGGGCTCTGCCTGTCATGTCTGCAGTAGCACTTGATCTTCGAGTATTTGCCAGTAATGCAGATCAGCAGTTGGTTAAGA
AAGGAAAAAGCAAAGTTGGGGACATGTTGGAAAAAGCTGCTGAGCTGTTGATGAGCTGTTTCCGAGTCTGTGCCAGTGAC
CCTGGTGCTGGTAGAGAGGATTCTAAGAAGTGGGGGATGCTGTTTCTGGTGAGTCAGTTATTCAAGATTTACTTTAAGGT
CAACAGACTCCATTTGTGTAAACCTCTCATCAGAGCCATCGACAGCTCAGATCTGAAAGATGATGATAGCACAGCACAGA
GAGTAACATACAGGTACTATGTTGGACGAAAGGCCATGTTTGATCGTGACTTTAAACAAGCCGAGGAGTACCTGTCCTTT
GCCTTTGAACACTGTCACCGTTTAAGTCAGAAGAACAAAAGGATGATTTTGATATATTTACTCCCAGTAAAAATGCTGTT
GGGTCATATGCCGACCATTGAGCTTTTGAAAAAGTATCATCTCATGCAGTTTGCTGAAGTAACCAGAGCTGTAAGCGAAG
GCTATCTCCTTCTATTGAACAAGGCTCTAGCGAAGCATGAGACCTTCTTTATTCGCTGTGGCGTCTTCCTTATCCTTGAA
AAGCTGAAGATCATCACCTACAGGAATCTTTTTAAGAAAGTGTACTTGTTACTCAAAACACACCAGTTATCTCTGGATGC
TTTTCTAGTTGCTTTGAAATTCATGCAAGTGGAAGACGTGGACATCGATGAAGTCCAGTGTATTCTAGCCAACCTGATAT
ACACGGGCCACATCAAAGGCTATATATCACATCGGCATCAGAAGCTAGTTGTTAGCAAGCAAAATCCGTTTCCTCCACTG
TCTACAGTGTGTTGA

Alignment

ORF - retro_mluc_231 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.09 %
• Parental protein coverage: 99.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VGATMAHITINQYLQQVYEAIETRDGESFAELVSFKHPHVANPRLQLASPEEKCQQVLEPPYDEMFAAHL
          VGATMAHITINQYLQQ.YEAIETRDGESFAELVSFK.PHVANPRLQLASPEEKCQ.VLEPPY.EMFAAHL
Retrocopy VGATMAHITINQYLQQAYEAIETRDGESFAELVSFKYPHVANPRLQLASPEEKCQHVLEPPYAEMFAAHL

Parental  RCTYAVGNHDFIEAYKCQTVIVQYTSFLRAFQAHKEENWALPVMYAVALDLRVFANNADQQLVKKGKSKV
          RCTYA.GNHDF.EAY.CQTVIVQ..SFLRAFQAHK.E.WALPVM.AVALDLRVFA.NADQQLVKKGKSKV
Retrocopy RCTYAAGNHDFTEAYTCQTVIVQ--SFLRAFQAHKGEKWALPVMSAVALDLRVFASNADQQLVKKGKSKV

Parental  GDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVNQLFKIYFKINKLHLCKPLIRAIDSSNLKEDY
          GDMLEKAAELLMSCFRVCASD..AG.EDSKKWGMLFLV.QLFKIYFK.N.LHLCKPLIRAIDSS.LK.D.
Retrocopy GDMLEKAAELLMSCFRVCASDPGAGREDSKKWGMLFLVSQLFKIYFKVNRLHLCKPLIRAIDSSDLKDDD

Parental  STAQRVTYRYYVGRKAMFDSDFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELLKKY
          STAQRVTYRYYVGRKAMFD.DFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELLKKY
Retrocopy STAQRVTYRYYVGRKAMFDRDFKQAEEYLSFAFEHCHRLSQKNKRMILIYLLPVKMLLGHMPTIELLKKY

Parental  HLMQFAEVTRAVSEGNLLLLNEALAKHETFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFL
          HLMQFAEVTRAVSEG.LLLLN.ALAKHETFFIRCG.FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFL
Retrocopy HLMQFAEVTRAVSEGYLLLLNKALAKHETFFIRCGVFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFL

Parental  VALKFMQVEDVDIDEVQCILANLIYMGHIKGYISHQHQKLVVSKQNPFPPLSTVC
          VALKFMQVEDVDIDEVQCILANLIY.GHIKGYISH.HQKLVVSKQNPFPPLSTVC
Retrocopy VALKFMQVEDVDIDEVQCILANLIYTGHIKGYISHRHQKLVVSKQNPFPPLSTVC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_231 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000013053	1 retrocopy	retro_etel_1306,
Macropus eugenii	ENSMEUG00000007451	1 retrocopy	retro_meug_2086,
Myotis lucifugus	ENSMLUG00000002542	3 retrocopies	retro_mluc_120, retro_mluc_231 , retro_mluc_271,