RetrogeneDB ID: retro_mluc_2271

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430169:190279..190853(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AGPAT3
• Ensembl ID: ENSMLUG00000004785
• Aliases: None
• Description: None

Sequence

>retro_mluc_2271
CTGGTCATCAACTTCATCCAGCTCTGCACCCTTGTCCTCTGGCCCCTAAACAAGCAGCTGTACCGCCGGCTGAACTGCCG
CCTCGCCTACTCGCTCTGGAGCCAGCTGGTCATGCTGCTGGAGTGGTGGTCCTGCACGCAGTGCACGCTCTTCTCCGACC
AGGCCACCATAGACCGCTTAGGGAAGGAGCACGCCATCATCATCCTCAACCACAACTTCGAGATCGACTTCCTGTGCGGG
TGGACCATGTGTGAGGGGTTCGGCGTCCTGGGGAGCTCCAAGGCCCTGGCCAAGAGGGAACTGCTGTGCATGCCCCTCAT
CGGCTGGACGTGGTACTTCCTGGAGATCGTGTTCTGCAAGAGGAAATGGGAAGAGGACCGGGACACCGTCATCGCAGGGC
TGAGGTGCCTGGCCGACTACCCTGAGTACATGTGGTTTCTCCTGTACTGTGAGGGCACGCGCTTCACAGAGAAGAAACAC
CGCGTCAGCATGGAGGTGGCCGCCTCCAAGGGGCTGTCCCCCCCTCAAGCACCACCTGCTGCCTCGCACCAAGGGCTTCA
CCACAGCGGTCCAG

Alignment

ORF - retro_mluc_2271 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.92 %
• Parental protein coverage: 50.53 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN
          LVINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN
Retrocopy LVINFIQLCTLVLWPLNKQLYRRLNCRLAYSLWSQLVMLLEWWSCTQCTLFSDQATIDRLGKEHAIIILN

Parental  HNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTVIAGLRCLADY
          HNFEIDFLCGWTMCE.FGVLGSSK.LAKRELLC.PLIGWTWYFLEIVFCKRKWEEDRDTVIAGLRCLADY
Retrocopy HNFEIDFLCGWTMCEGFGVLGSSKALAKRELLCMPLIGWTWYFLEIVFCKRKWEEDRDTVIAGLRCLADY

Parental  PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGL-PPLKHHLLPRTKGFTTAVQ
          PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGL.PPLKHHLLPRTKGFTTAVQ
Retrocopy PEYMWFLLYCEGTRFTEKKHRVSMEVAASKGL>PPLKHHLLPRTKGFTTAVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2271 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004785	2 retrocopies	retro_mluc_1325, retro_mluc_2271 ,
Sarcophilus harrisii	ENSSHAG00000008796	1 retrocopy	retro_shar_1,