RetrogeneDB ID: retro_mluc_2177

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430077:1245433..1247797(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VPS8
• Ensembl ID: ENSMLUG00000007511
• Aliases: None
• Description: None

Sequence

>retro_mluc_2177
ACTATGTGGGATTTGGCCAGTGGAAAACTTCTAAGATCAATAACAGATGCTCATCCTCCAGGAACAGCAATATTGCATAT
TAAGTTTACAGATGATCCAACTCTTGCAATTTGCAATGACAGTGGAGGCTCTGTTTTTGAATTGACATTTAAGAGAGTGA
CGGGAGTGAGAACTTGCGAGTCTAGATGCCTGTTCAGTGGTTCCAAGGGTGAAGTGTGCTGTATTGAGCCTCTTCATCCT
AAGCTTGACTTGAAAGATCATCCCATCACACAGTTTTCCTTACTGGCCATGGCATCCTTAATCAAGATACTGGTCATTGG
ATTGAAACCATCCTTGAAAGTGTGGATGACTTTTCCCTATGGACATATGGATCCTTCCAGTGTACCATTGCTGGCCTGGA
AGTTTGTGGCAGTGCATAATTCTGTGAATCCCATGCTTGCTTTCTGCAGAGGAGATGTTGTGCATTTCCTTTTGGTTAAG
AGAGATGAATCTGGAGCAATCCATGTTACTAAGCAAAAGCATCTTCACCTCTACTATGACCTCATCAACTTTACTTGGAT
GAACTCACGCACAGTTGTACTCTTGGATAGTGCAGAGAAGTTGCATGTGATTGATCTGCAAATTCAAGAGGAATTGGAAA
CAGTGGAAATCTCAGAAATTTAGTTGGTCTATAATAGCAGCCATTTCAAATCACTAGCCACCAGAGGAAATGTTAGCCAG
GCACTGGCTTTGGTTGGAGAGAAGGCTTGTTATCAATCCATCAGTAGCTATGGTGGTCAGATCTTTTATTTGGGGACAAA
ATCTGTTTATGTAATGATGCTGAAGAGCTGGAGAGAGAGGGTGGATCATCTCCTGAAACAAGATTGTCTTACAGAAGCCT
TGGCTCTTGCATGGTCTTTCCATTAGGGAAAAGCAAAAGCAGTTGTGGGATTATCAGGGGATGCCAGTAAGCGAAAGGCT
GTTGTTGCAGATTGAATGGTAGAAATCCTATTCCATTATACAGATCGAGCTCTGAAAAAGTTCCCAGACCAGGGAAAAAT
CCAAGTGATGAAACAGCATTTTCAGGATATGGTGCCTGTTATAGTTGATTACTGCCTTCTGCTACAGCGAAAAGATCTTT
TATTTAGCCAGATGTATGACAAATTAAGTGAGAATTCAGTGGCCAAAGGAGTGTTTTTGGAGTGCCTTGAGCCATATATT
TTAAGTGATAAATTGGTGGGGATCACACCCCAGGTAATGAAAGACTTGCTTGTTCATTTCCAAGATAAAAAGTTAATGAA
AAATGTGGAAGCTCTCATTGTACATATGGATATCACCAGCTTAGATATTCAGCAGGTAATTCTCATGTGTTGGGAAAATC
ATCTATATGATGCCATGATCTATGTTTACAACAGAGGCATGAATGAGTTTATTAGTCCAATGGAGAAACTTTTCAAAGTC
ATTGCTCCTCCTCTGAATGCAGGAAAGACACTAACAGATGAACAAGTTGTTATGGGCAACAAGCTTCTTGTATATATTAG
CTGTTGTCTAGCAGGTCGTGCCTATCCTCTTGGTGACATCCCTGAAGATCTTGTTCCTTTGGTTAAAAACCAGGTTTTTG
AATTTCTAATTCGCCCGCATTCAGCAGAAGCTTCCCCTGAGGGAGAAATCTATCCCTATGTTCGGACTTTGCTTCATTTT
GACACAAGAGAATTTCTAAATGTATTGGCACTGACTTTTGAAGATTTTAAAAATGACAAGCAAGCTGTAGAATATCAACA
GCGTATTGTGGATATATTGTTGAAAGTTATGGTGGAGAACTCAGATTTTACTCCCTTACAAGTCGGGTGTCTCTTTACAT
TCCTTGCCCAGCAGCTTGCAAAACCTGACAATACCTTGTTTGTAAACAGAACCCTCTTTGATCAGGTCCTTGAATTCCTC
TGTAGTCCTGATGATGACTTTTGGCACTCTGAAAGACAGTAGGTCCTTTTAGAATTGCTGCAGGCTGGAGGCATAGTTCA
ATTTGAAGAGAGTTGGCTCATCTGCATGGCAGAAAAAGCAGAGTTTTATCAAATTTGTGAGTTTATGTATGAACGAGAAC
ACCAATATGACAAAATTATTGGTTGCTACTTACGTGACCCACTAAGAGAGGAAGAAGTCTTTAACTACATTCACAAAATC
TTATCCATTCCTGGCCACAGTTCAGAGGAGAAGCAGTCTGTATGGCAGAAAGCAATGGATCACATTGAGGAACTTGTGTC
CCTGAAGCCTTGTAAAGCTGCCGAGCTAGTTGCTACTCACTTTTCTGAACAGATTGAAACAGTCATTAATAAACTTCAGA
CCCAGGTTTTGCTTTTCAAATTTTTGAGGAGTCTTCTTGAACCA

Alignment

ORF - retro_mluc_2177 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.69 %
• Parental protein coverage: 55.26 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKG
          TMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRV.GVRTCESRCLFSGSKG
Retrocopy TMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVTGVRTCESRCLFSGSKG

Parental  EVCCIEPLHSKPDLKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAAHN
          EVCCIEPLH.K.DLKDHPITQFSLLAMASL.KILVIGLKPSLKVWMTFPYG.MDPSSVPLLAW.FVA.HN
Retrocopy EVCCIEPLHPKLDLKDHPITQFSLLAMASLIKILVIGLKPSLKVWMTFPYGHMDPSSVPLLAWKFVAVHN

Parental  SVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWMNSRTVVLLDSAEKLHVIDRQTQE
          SVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWMNSRTVVLLDSAEKLHVID.Q.QE
Retrocopy SVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWMNSRTVVLLDSAEKLHVIDLQIQE

Parental  ELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRER
          ELETVEISE..LVYNSSHFKSLAT.GNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMML.SWRER
Retrocopy ELETVEISEI*LVYNSSHFKSLATRGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLKSWRER

Parental  VDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRKAVVADRMVEILFHYTDRALKKCPDQGKIQVM
          VDHLLKQDCLTEALALAWSFH.GKAKAVVGLSGDASKRKAVVAD.MVEILFHYTDRALKK.PDQGKIQVM
Retrocopy VDHLLKQDCLTEALALAWSFH*GKAKAVVGLSGDASKRKAVVAD*MVEILFHYTDRALKKFPDQGKIQVM

Parental  EQHFQDMVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHF
          .QHFQDMVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHF
Retrocopy KQHFQDMVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHF

Parental  QDKKLMENVEALIVHMDITSLDIQQVVLMCWENHLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKT
          QDKKLM.NVEALIVHMDITSLDIQQV.LMCWENHLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKT
Retrocopy QDKKLMKNVEALIVHMDITSLDIQQVILMCWENHLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKT

Parental  LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVRTLLHF
          LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIR.HSAEASPE.EIYPYVRTLLHF
Retrocopy LTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRPHSAEASPEGEIYPYVRTLLHF

Parental  DTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNR
          DTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTP.QVGCLFTFLA.QLAKPDNTLFVNR
Retrocopy DTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPLQVGCLFTFLAQQLAKPDNTLFVNR

Parental  TLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYEREHQYDKII
          TLFDQVLEFLCSPDDD..HSERQ.VLLELLQAGGIVQFEES.LI.MAEKAEFYQICEFMYEREHQYDKII
Retrocopy TLFDQVLEFLCSPDDDFWHSERQ*VLLELLQAGGIVQFEESWLICMAEKAEFYQICEFMYEREHQYDKII

Parental  DCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIN
          .CYLRDPLREEEVFNYIH.ILSIPGHS.EEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIN
Retrocopy GCYLRDPLREEEVFNYIHKILSIPGHSSEEKQSVWQKAMDHIEELVSLKPCKAAELVATHFSEQIETVIN

Parental  KLENQVLLFKFLRSLLDP
          KL..QVLLFKFLRSLL.P
Retrocopy KLQTQVLLFKFLRSLLEP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2177 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007511	1 retrocopy	retro_mluc_2177 ,