RetrogeneDB ID: retro_mluc_2168

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430069:938074..938454(+)
• Located in intron of: ENSMLUG00000013515

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CRISP2
• Ensembl ID: ENSMLUG00000010302
• Aliases: None
• Description: None

Sequence

>retro_mluc_2168
TGGTCAAATGCAATTCAAAACCGATAGGATGACAGCCATGATTTTGTCTATTGTGTAGGACCAATTAGTTCAAGTACAGT
TGTACGTTATACCCAAGTTATTCGCTACTAATCTTACCATATTGGATAAGGAACTGCCTATTGTCCCAATCAAGACAGTC
TAAAATACTATATGTTTGTCAATATTGTCCTGTTGATAATATTATTAAAAAGAATACCTCTTACAAACAAGAAACATCTT
GTGCCAATTGCCCCGGTAACTGTGACAATTAACTATGCGCCAATAGTTGCCAGTATGAAGATCTCCTTAATAACTGTGGT
TCCTTAAAGACAACAGCTGGCAGTGAACAAGAATTGCCCAAGGAAAAGTGCAAGGCCACT

Alignment

ORF - retro_mluc_2168 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.54 %
• Parental protein coverage: 50.19 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  WSSAVQSWYEERHDFVYGAGPKSPGAVVGHYTQLVWYSSYRLGCGVAYCPNQENLKYF-YVCHYCPAGNN
          WS.A.Q......HDFVY..GP.S...VV..YTQ...Y.SY..G.G.AYCPNQ..LKY..YVC.YCP...N
Retrocopy WSNAIQNR*DDSHDFVYCVGPISSSTVV-RYTQVIRY*SYHIG*GTAYCPNQDSLKYY<YVCQYCPV-DN

Parental  VSKKNTPYQQGEPCASCPNNCNNGLCTNSCEYEDLLSNCGSLKTTAGCGHELLKEKCKAT
          ..KKNT.Y.Q...CA.CP.NC.N.LC.NSC.YEDLL.NCGSLKTTAG...EL.KEKCKAT
Retrocopy IIKKNTSYKQETSCANCPGNCDN*LCANSCQYEDLLNNCGSLKTTAGSEQELPKEKCKAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2168 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010302	1 retrocopy	retro_mluc_2168 ,
Monodelphis domestica	ENSMODG00000025686	1 retrocopy	retro_mdom_1586,
Vicugna pacos	ENSVPAG00000009962	1 retrocopy	retro_vpac_172,