RetrogeneDB ID: retro_mluc_2108

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430037:763890..764901(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FADS3
• Ensembl ID: ENSMLUG00000001712
• Aliases: None
• Description: None

Sequence

>retro_mluc_2108
GTGACCGATGAGTTTCGGGACCTGCGGGCGGCCGTGGAGCAGATGGGGCTCATGAAGGCCAACAGCGCCTTCTTCTTGCT
GTACCTGCTGCACATCCTGCTGATGGACGCGGCCGCCTGGCTCACGCTGTGGGCCTTTGGGACGTCCTTCGTGCCCTTCG
TCCTCAGTGCGGTGCTGCTCAGTGCAGTTCAGGCCCAGACTGGCTGGCTGCAGCACGACTTCGGGCACCTGTCTGTCTTC
GGCACCTCTAGGTGGAACCACCTGCTCCATCATTTCGTGATCGGCCACCTGAAGGGGGCCCCCGCCAGCTGATGGAACCA
CATGCACTTCCAGCACCACGCCAAGCCCAACTGCTTCCGCAAAGACCCAGACATCAACATGCACCCCTTCTTCCTCGCCT
TGGGGAAGATCCTCTCTTTGGAGCTTGGGAAACAGAAGAAAAAGTACATGCCGTACAACCACCAGCACAAATACTTCTTC
CTGATTGGGCCCCCAGCCTTGCTACCTCTCTACTTCCAGTGGTACATCTTCTTCTTCGTTATCCAGCAGAAGAAGCGGGT
GGACCTGGCCTGAATGATCACCTTCTACTTCCGCATCGCCCTCACTTACCTGCCGTTGCTGGGGGTGAAGGGCTTCCTGG
GCCTTTTCTTCGTGGTCAGGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT
GACCATGACCAGAACAGGGACTGGGTCTCCACCCAGCTCCAGGCAACGTGCAACGTGGACAAGTCGGCCTTCAATGACTG
GTTCAGTGGGCACCTCAACTTCCAGATTGAACATCACCTTTTCCCCACGATGCCACGACACAGTTACAACAAAGTGGCTC
CCCTCGTGCGCTCCCTGTGTGCCAAGCACGGCATCGAGTACCAGTCCAAGTCCCTGCTCACGGCCTTCGCGGACATTGTT
CACTCCCTGAAAGAGTCGGGGCAGCTCTGGCTGGATGCCTACCTTCACCAG

Alignment

ORF - retro_mluc_2108 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.9 %
• Parental protein coverage: 74.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVEDFRALRQAAEDMKLFEAQPAFFTLLLVHILAMELLAWLIVYLLGPGWLPSTLTALILTVSQAQSWYL
          ....FR.LR.A.E.M.L..A..AFF.L.L.HIL.M...AWL.....G....P..L.A..L...QAQ...L
Retrocopy VTDEFRDLRAAVEQMGLMKANSAFFLLYLLHILLMDAAAWLTLWAFGTSFVPFVLSAVLLSAVQAQTGWL

Parental  QHDLGHTSVF-RKRWNHVAQQFVMGHLKGFSAHWWNFRHFQHHAKPNVSYKDPDVTLAPIFL-LGES-SA
          QHD.GH.SVF...RWNH....FV.GHLKG..A..WN..HFQHHAKPN...KDPD....P.FL.LG...S.
Retrocopy QHDFGHLSVFGTSRWNHLLHHFVIGHLKGAPAS*WNHMHFQHHAKPNCFRKDPDINMHPFFLALGKILSL

Parental  EYGRKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWQDLLWAASFYCRFFWSYIPFYSVS
          E.G..K..Y.PYNHQH.YFFLIGPP.L....F...............DL.....FY.R....Y.P...V.
Retrocopy ELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFFFVIQQKKRVDLA*MITFYFRIALTYLPLLGVK

Parental  GALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVESSPFIDWFSGHLNFQIEHHL
          G.L.LF..VR.LES.WFVW.TQMNHIP..I.H...RDW.S.QL.ATCNV..S.F.DWFSGHLNFQIEHHL
Retrocopy GFLGLFFVVRFLESNWFVWVTQMNHIPMHIDHDQNRDWVSTQLQATCNVDKSAFNDWFSGHLNFQIEHHL

Parental  FPTMPRHNYHRIAPLVKALCAKHGLTYEVKPFLTALVDIVRSLKKSGNVWLKAYLQE
          FPTMPRH.Y...APLV..LCAKHG..Y..K..LTA..DIV.SLK.SG..WL.AYL..
Retrocopy FPTMPRHSYNKVAPLVRSLCAKHGIEYQSKSLLTAFADIVHSLKESGQLWLDAYLHQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2108 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001712	1 retrocopy	retro_mluc_2108 ,
Myotis lucifugus	ENSMLUG00000026963	1 retrocopy	retro_mluc_1740,