RetrogeneDB ID: retro_mluc_210

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429797:5754550..5756980(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026151
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012381
• Aliases: None
• Description: None

Sequence

>retro_mluc_210
ATGTTTTACGTTATTGGTGGAATCACAGTATCTGTGGTTGCATTCTTCTTCACAATTAAGTTCCTCTTCGAGCTCGCTGC
ACGTGTAGTCAGCTTCCTCCAGAATGAGGACCGTGAGCGCCGAGGGGACCGGACTATTTATGACTATGTGCGGGGAAATT
ACCTGGATCCCCGGTCTTGCAAAGTCTCCTGGGATTGGAAGGACCCCTATGAGGTGGGCCACAGCATGGCCTTCCGAGTG
CATTTATTCTATAAGAACGGGCAGCCTTTCCCTGCACATCGGCCTGTGGGACTAAGAGTTCACATCTCTCATGTTGAGCT
AGCAGTGGAAATTCCAGTGACCCAGGAAGTCCTCCAGGAGCCCAGTTCCAATGTGGTCAAGGTGGCCTTCACTGTGCGCA
GGGCTGGGCGTTATGAAATCTCAGTGAAGCTTGGTGGATTAAATGTGGCCTACAGTCCCTACTACAAGATTTTTCAGCCT
GGAATGGTGGTTCCTTCCAAGACCAAAATTGTGTGCCATTTTTCTACTCTTGTGTTGACCTGTGGGCAGCCACACACCCT
TCAAATAGTGCCCCGAGATGAGTATGACAACCCTACCAACAATTCCACGTCCTTGAGAGATGAGCACAATTACAGTTTGT
CCATTCATGAGCTCGGTCCCCAAGAAGAAGAGCACACTGGTGTCTCATTTGAGAAGTCAGTGACCTCCAACAGACAGACC
TGCCAGGTCTTCTTGCGACTCACCCTGCATTCTCGTGGCTGCTTCCATGCCTGCATTTTGTACCAAAATCAGCCAATCCA
TAACGGCGAATTTGACATTATTGTCCTAAGTGAGAATGAAAAGAATATTGTTGAACGCAATGTGTCCACCTCAGGAGTGA
GCATTTACTTTGAGGCTTATCTTTATAATGCTGCCAACTGCACCAGCACACCGTGGCACCTCCCACCCATGCACATGAGC
TCTTCCCAGCGCCGGCCTTCCATGGCTCCTGAGGAGGAAGACGAAGATTCACCTTCTGAGTGTCACACCCCCGAGAAGCA
ATTCTCAGTGAAGGAGTTCTACCTGAAGATCATTCCCTGGCGCCTTTATACCTTCCGAGTGTGCCCAGGAACCAAATTTT
CGTACCTTGGCCCCGACCCTGTCCATAAGCTCCTTACACTGATGGTAGATGATGGCATTCAGCCTCCTGTGGAGCTCAGC
TGTAAGGAGAGGAACATCCTCGCAGCCACTTTCATCTGTTCCCTCCATAAGAACATAGGAGGCTCTGAGACCTTTCAGGA
CAAGGTGAACTTTTTCCAGCGAGAGCTTCGGCAGGTACATATGAAAAGACCACATTCCAAAGTCACCCTGAAGGTCAGCA
GACATGCCTTGTTGGAATCGTCTCTGAAAGCCACTCGGAATTTCTCCATCTCAGATTGGAGCAAGAACTTTGAAGTGGTT
TTCCAGGATGAAGAAGCTCTGGACTGGGGAGGGCCTCGCCGGGAATGGTTTGAGCTAATCTGCAAAGCACTATTTGATAC
CACCAATCAGCTCTTTACCCGATTCAGTGACAACAACCAAGCATTAGTGCACCCTAACCCTAACCACCCCCCTCATCTAC
GCTTGAAGATGTATGAGTTTGCAGGGCGGCTCATGGGCAAGTGTCTCTATGAGTCCTCTCTAGGAGGAGCCTACAAGCAG
TTGGTCCGCGCTCGCTTCACCCGTTCTTTCTTGGCCCAAATCATAGGACTACGTATGCATTACAAGTACTTTGAAACGGA
TGACCCAGAATTCTACAAATCTAAAGTTTGTTTTATCCTCAACAATGACATGAGTGAGATGGAGCTGGTCTTTGCAGAAG
AGAAATATAACAAATCAGGTCAATTGGATAAGGTTGTTGAACTCATGACAGGCGGAGCTCAAACCCCAGTCACTAATGCG
AATAAAATCTTCTATTTAAATTTGCTGGCCCAATATCGGCTGGCCAGTCAAGTGAAAGAGGAGGTGGAACATTTCCTGAA
AGGCCTGAATGAGTTGGTCCCTGAGAACCTTTTGGCTATTTTTGATGAAAATGAGCTTGAGCTACTGATGTGTGGGACTG
GGGACATCAGTGTGGCTGATTTCAAAGCCCATGCAATGGTCGTTGGTGGCTCATGGCATTTCAGAGAAAAGGTCATGAGG
TGGTTTTGGACTGTAGTTTCCAGTTTGACCCAGGAGGAGTTGGCTCGGCTGCTTCAGTTCACAACAGGCTCCTCTCAGCT
GCCACCCGGAGGCTTTGCGGCCCTCTGTCCCTCATTCCAGATTATTGCTGCTCCGACCCACAGCACGCTACCAACTGCAC
ACACATGTTTTAACCAGCTGTGCCTCCCTACGTATGACTCGTATGAAGAGGTGCACAGGATGCTGCAGCTGGCCATCAGC
GAGGGCTGTGAGGGCTCTGGCATGCTCTGA

Alignment

ORF - retro_mluc_210 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.25 %
• Parental protein coverage: 58.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PEKVKKPKKVYCYVSPKQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLLTLVVDDGIQPPVEL
          PE.........C....KQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLLTL.VDDGIQPPVEL
Retrocopy PEEEDEDSPSECHTPEKQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLLTLMVDDGIQPPVEL

Parental  SCKERNILAATFIRSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFS
          SCKERNILAATFI.SLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFS
Retrocopy SCKERNILAATFICSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFS

Parental  ISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPNRPPHLRLKMYE
          ISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPN.PPHLRLKMYE
Retrocopy ISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPNHPPHLRLKMYE

Parental  FAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMEL
          FAGRL.GKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMEL
Retrocopy FAGRLMGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMEL

Parental  VFAEEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLA
          VFAEEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLA
Retrocopy VFAEEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLA

Parental  IFDENELELLMCGTGDISVADFKAHAMVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPP
          IFDENELELLMCGTGDISVADFKAHAMVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPP
Retrocopy IFDENELELLMCGTGDISVADFKAHAMVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPP

Parental  GGFAALCPSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGML
          GGFAALCPSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEG.GML
Retrocopy GGFAALCPSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGSGML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_210 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012381	1 retrocopy	retro_mluc_210 ,