RetrogeneDB ID: retro_mluc_2070

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430012:1707716..1708069(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB21
• Ensembl ID: ENSMLUG00000013239
• Aliases: None
• Description: None

Sequence

>retro_mluc_2070
GCATCATTCGAAACAAACAAGTTAAATATTGGTGGGAAAAGAGTAAACCTTGCTATAAGGGATACAGCAGATCGAGAGAG
ATTCCATGCATTGGACCAAATTTCCTACAAAGATTCAAATGAAACTATTTTAGCTTATGATATAACAGACGAAGATTCTT
TTCAGAAGGTAAAATACCTGGTCAAAGAATTACAGAAAGTGTTGGAAATGAAATCTGTGCATGTACAGTTGGTCATACAA
TAGACTTGGAAAAGGAGAGACATGTTTCCATTTAGGAAGCAGAAACATATGCGGAATCTGTGGGAGCAAAACATTATCAC
ACATCAGCCAAACAGAACAAAAGAACTGAGGAA

Alignment

ORF - retro_mluc_2070 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.99 %
• Parental protein coverage: 68.6 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-G
          ASF.T.KLNIGGKRVNLAI.DTA..ERFHAL..I.Y.DSN..IL.YDITDEDSFQKVK..VKEL.K.L.G
Retrocopy ASFETNKLNIGGKRVNLAIRDTADRERFHALDQISYKDSNETILAYDITDEDSFQKVKYLVKELQKVL<G

Parental  NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE
          NEIC.C.VG..IDLEKERHVSI.EAE.YAESVGAKHYHTSAKQNK..EE
Retrocopy NEICACTVGHTIDLEKERHVSI*EAETYAESVGAKHYHTSAKQNKRTEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2070 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000004732	1 retrocopy	retro_dord_457,
Microcebus murinus	ENSMICG00000009168	1 retrocopy	retro_mmur_176,
Myotis lucifugus	ENSMLUG00000013239	1 retrocopy	retro_mluc_2070 ,
Ochotona princeps	ENSOPRG00000011037	1 retrocopy	retro_opri_378,