RetrogeneDB ID: retro_mluc_2004

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429982:1626258..1626563(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025607
• Aliases: None
• Description: None

Sequence

>retro_mluc_2004
TTCCAATCTCTATTACCGTGGGAGCTGGAAGCCTTCAAGAAGGCCAGTGAAACCTGGGAAGATTTGCTCTCGCTGAATGA
CTGGAGCTGCAGCTCTCGCCTCTTCCCCAGAACCAAGGACCTGAGGCAGCTGCAGATGTGGGAGCACCCGTGGCCTGGGG
GCTAGACTTGCTGCGGAAGGTCCTTGGAAACTAAGGCTGACTTGTCCCTGGGGGTGTCCTGGACCAACCTCTTCGCAGGC
TATGCCACAGCCACTCTGAGCTCCAGGTTTGTTTCTCGGCTCAGTCTACAGCAGGCCCCAACCCC

Alignment

ORF - retro_mluc_2004 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.33 %
• Parental protein coverage: 53.06 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FKSLSPQEMKAFRRAKAALEESLLLRNRSCSSHPLPRTRDLRQLQVWER-PVALEAELALTLKVLGTVAN
          F.SL.P.E..AF..A....E..L.L...SCSS...PRT.DLRQLQ.WE..PVA....L.L..KVLG....
Retrocopy FQSLLPWELEAFKKASETWEDLLSLNDWSCSSRLFPRTKDLRQLQMWEH<PVAWG--LDLLRKVLGN*G*

Parental  STLGDILDQPLRTLRHIHSKLRACVPAQSTAGPRP
          ...G..LDQPLR.L.H.HS.L..C..AQSTAGP.P
Retrocopy LVPGGVLDQPLRRLCHSHSELQVCFSAQSTAGPNP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2004 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000025607	1 retrocopy	retro_mluc_2004 ,
Monodelphis domestica	ENSMODG00000023790	1 retrocopy	retro_mdom_1793,
Tursiops truncatus	ENSTTRG00000003543	1 retrocopy	retro_ttru_769,