RetrogeneDB ID: retro_mluc_1968

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429966:844520..845552(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABCD3
• Ensembl ID: ENSMLUG00000000203
• Aliases: None
• Description: None

Sequence

>retro_mluc_1968
CTGAGTGCCATGGCGGCCTTCAGCAAGGTGGGAAACTTCTCCCTGGTGGGGCTGCGTTCCTGCTGCTCTGCCTGCTCCAC
AAGTTGCGTCTCACTCTCTGCCTGTACAGTAAGAAAAGTAGAAAGCCACCATTATAAAAAAAATGAGAAAGAAGGGAAAA
AAGAACAGCTATGGTGGACGCGGTGTTGTTCTCAAGGATTCTGAAAATCATGGTCTCTAGAACATTTTGTAAAAAGATGG
GTTACTTGGTACTTATTGCTGTTATGCTGGTGTCTCAAACATATTGTGATGTTTGAATGATTCAAAATGGGACACTCATT
GAAAGTGGTATCATTGGTCATAGCAGGAAGGAATTCAAGAGATACTTATTCAACTTCATGGCTGCCATGCCTCTCATCTC
TCTGGTTAAAAGCTTCTTGGAGTTTGGGTTAAATGAGCTCACATTGTGCTTCCAAGTAAGACTAACTAAATGGCTCTGCG
AAGAATATCTCCAAGTGTTCACATATTATAAAACGGGAAATCTGGACAACAGAATAGCTAATCCAGACCAAATGATTGCA
CAAGGTGTAGAAAAGTTTTGTGACAGTGTAGTTGATCTGTATTCAAATCTTTGTAAGCCATTTTTAGAGATAGTTTTGTA
TATCTTCAAGTTATGAGTGCAATAGGAGCTCGGGGCCCAGTGCGCAGGATGGCCTACTTGCTTGTTTCTGGGTTATTCCT
AACTCTACCTAGAAGGCTCCTTAGTAAGATGACAGTAACTGAGCAAAAGTATGAAGGAGAGTATAGATATGTTAATTCCT
GGCTCATCGCAAACAGTGAAGAAATTGCCTTTTATGACGGAAATAAAAGAGAAAAGCAGAAAACCCACACTGTCTTCCAA
AAACTGACGGAATGCCTACATAATTTCATTTTGTTTCAGTTTTCTATGGGCTTTATTGATAGCATAGTTGACAAATCTCC
TGCCCCTGTAGTTGGTTGCCTGTTGTCAGCTGCCCTTTCCTAGATTTGTCTCACCCTGGCCACCTCCAGAAC

Alignment

ORF - retro_mluc_1968 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.51 %
• Parental protein coverage: 52.81 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MAAFSKYLTARNSSLAG-AAFLLLCLLHKRRRALGLHGKKNGKPPLQKNEKEGKKERAMVDKVFFSRLSR
          ..A........N.SL.G.AAFLLLCLLHK.R..L.L.....................AMVD.V.F...SR
Retrocopy LSAMAAFSKVGNFSLVG<AAFLLLCLLHKLRLTLCLYSXXXXXXXXXXXXXXXXXXXAMVDAVLF---SR

Parental  ILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSRKDFKRYLFNFIAAMPLISLV
          ILKIMV.RTFCK..GYL.LIAVMLVS.TYCDV.MIQNGTLIESGIIG.SRK.FKRYLFNF.AAMPLISLV
Retrocopy ILKIMVSRTFCKKMGYLVLIAVMLVSQTYCDV*MIQNGTLIESGIIGHSRKEFKRYLFNFMAAMPLISLV

Parental  NNFLKFGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSK
          ..FL.FGLNEL.LCF.VRLTK.L.EEYLQ.FTYYK.GNLDNRIANPDQ...Q.VEKFC.SVVDLYSNL.K
Retrocopy KSFLEFGLNELTLCFQVRLTKWLCEEYLQVFTYYKTGNLDNRIANPDQMIAQGVEKFCDSVVDLYSNLCK

Parental  PFLDIVLYIFKL-TSAIGAQGPASMMAYLLVSGLLLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEE
          PFL.IVLYIFKL..SAIGA.GP...MAYLLVSGL.LT..RR...KMT.TEQKYEGEYRYVNS.LI.NSEE
Retrocopy PFLEIVLYIFKL<MSAIGARGPVRRMAYLLVSGLFLTLPRRLLSKMTVTEQKYEGEYRYVNSWLIANSEE

Parental  IAFYDGNKREKQTIHAVFQKLVEHLHNFILFRFSMGFIDSIIAKYLATVVGYL-VVSRPFLDLSHPRHLK
          IAFYDGNKREKQ..H.VFQKL.E.LHNFILF.FSMGFIDSI..K..A.VVG.L.VVS.PFLDLSHP.HL.
Retrocopy IAFYDGNKREKQKTHTVFQKLTECLHNFILFQFSMGFIDSIVDKSPAPVVGCL<VVSCPFLDLSHPGHLQ

Parental  S
          .
Retrocopy N

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1968 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000203	2 retrocopies	retro_mluc_1968 , retro_mluc_2601,