RetrogeneDB ID: retro_mluc_192

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429956:386552..387704(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030011
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CDK10
• Ensembl ID: ENSMLUG00000013616
• Aliases: None
• Description: None

Sequence

>retro_mluc_192
NTGTCGCCCATCGAGCCCAAGCAGGAGCTGCCCAAGTACCTGCCCGCCCTGCAGGGCTGCCGCAGTGTGGAGGAGTTCCA
GCGCCTGAACAGGATCGAGGAGGGCACCTACGGGGTGGTGTACAGAGCCAAGGACAAGAAGACCGATGAGATTGTGGCTC
TGAAGCGGCTGAAAATGGAGAAGGAGAAGGAAGGCTTTCCGATCACGTCGCTGAGGGAGATCAGCACCATTCTCAAGGCG
CAGCACCCCAACATCGTTACGGTCAGGGAGATCGTCGTGGGCAGCAACATGGACAAGATTTACATTGTGATGAACTACGT
GGAGCATGACCTCAAGAGCCTGATGGAGACCATGAAGCAGCCTTTCCTGCCAGGGGAGGTGAAGACACTGATGATCCAGC
TGCTGTGCGGAGTGAAGCACCTGCACCACAACTGGATCCTGCACCGAGACCTCAAGACCTCCAACCTGCTGCTGAGCCAC
GCCGGCATCCTCCAGGTGGGCGACTTCGGGCTGGCGCGGGAGTATGGGTCCCCCCTGAAGGCCTACACCCCTGTCGTCGT
GACCTTATGGTACCGCGCCCCAGAGCTGCTGCTGGGGGCCAAGGAGTACTCCACGGCCGTGGACATGTGGTCTGTGGGCT
GCATCTTCGGGGAGCTGCTGACACAGAAACCGCTGTTCCCAGGGAAGTCGGAGATTGATCAGATCAACAACGTGTTTAAG
GACCTGGGGACGCCCAGTGAGAAGATCTGGCCCGGCTACAACCAGCTGCCCGCCGTGAAGAAGATGACCTTCACCGAGTA
CCCCTACAACAGCCTGCGCAAGCGCTTCGGGGCGCTGCTCTCTGACCAGGGCTTTGACCTCATGAACAAGTTCCTGACCT
ACTTTCCTGGGCGGAGGGTCAGCGCAGAGGACGGTCTCAAGCACGAGTATTTCCGCGAGACCCCCCTCCCCATCGACCCC
TCGATGTTCCCCACGTGGCCCGCCAAGAGTGAACAGCAAAGGGTGAAGCGTGGCACCAGCCCAAGACCCCCCGAGGGAGG
CCTCGGCTACCGCCAGCTGGGTGACGATGACCTGAAGGAGACCGGCTTCCACCTCACCACCACCAACCAGGGGGCCTCGG
CCACCGGCCCTGGCTTCAGCCTCAAGTTCTGA

Alignment

ORF - retro_mluc_192 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.79 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GVPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQV
          G.PI.SLREI...L...HPNIV...E.VVG.....I..VM.Y.E.DL.SL.E.M..PF....VK....Q.
Retrocopy GFPITSLREISTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQL

Parental  LRGLQYLHQNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYGIPVKPMTPKVVTLWYRAPELLLGTTTQT
          L.G...LH.N.I.HRDLK.SNLL....G.....DFGLAR.YG.P.K..TP.VVTLWYRAPELLLG.....
Retrocopy LCGVKHLHHNWILHRDLKTSNLLLSHAGILQVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYS

Parental  TSIDMWAMGCVLAELLAHKPLLPGTSEIHQVDLIVQLLGTPSENIWPGFSRLPLVSQYSLRKQPYNNLKH
          T..DMW..GC...ELL..KPL.PG.SEI.Q.......LGTPSE.IWPG...LP.V........PYN.L..
Retrocopy TAVDMWSVGCIFGELLTQKPLFPGKSEIDQINNVFKDLGTPSEKIWPGYNQLPAVKKMTFTEYPYNSLRK

Parental  RF-PWLSEAGLRLLNLLFMYDPKKRATAGDCLESSYFKGKPL
          RF...LS..G..L.N....Y.P..R..A.D.L...YF...PL
Retrocopy RFGALLSDQGFDLMNKFLTYFPGRRVSAEDGLKHEYFRETPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_192 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013616	1 retrocopy	retro_mluc_192 ,