RetrogeneDB ID: retro_mluc_189

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429984:14771..16745(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010315
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009346
• Aliases: None
• Description: None

Sequence

>retro_mluc_189
ATCCAGCGACTGAGCAGATCCAGTGGTGCGCGACGAGAGCTGGCGGTTGCCATGGCGATGCGGGAGCTGGTGGAGGCCGA
ATTCGGGCGTGCCAACCCACTCATGAAGCTGGCCGGGCACTTCACCCAGGACAAGGCCCTTCGGCAGGAGGGGCTGAGGC
CCGGTCCCTGGCCACCGGGGACCCCAGCCTCCGAGGTGGTCCCTAAGCCTTTGGGGGTAGCCTCTGAAGATGAGTTGGTG
GCCGAATTCCTCCAGGACCAGAATGAACCACTTATATTGCGTGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCAGA
GATGCAGGAGATTGAACAGTCAAGTTTCCGCCAGGCACCCCAGAGAGCCCCTGGGGTGGCAGACTTGGCCTTGTCTGAGA
ACTGGGCCCAGGAGTCTCTTGCAGCTGGAGATGCTGTGGATGTAACGCAGGATTATAATGAGACGGACTGGTCCCAAGAA
TTCATCTCTGAAGTTACAGACCCTTTGTCTGTGTCTCCTGCCCGCTGGGCTGAGGAATATCTGGAACAGTCAGAGGAGAA
GTTGTGGCTGGGAGAGCCCGAGGGAACGACTGCCAGTGATCACTGGTATAATGATTATCATCCTGAGGATGATCTACAGC
ATACTGCCAGTGACTTTGTGGCCAAAGTGGATGACCCCAAATTGGCTAACTCTGAGTTCCTGAAATTCGTGCGGCAGATT
GGCGAGGGGCAGGTGTCCCTGGAGTCCGGTGCAGGGTCGGGCCGAGCTCAGGCAGAACAGTGGGCAGCAGAGTTTGTACA
GCAGCAGGGTACATCAGATGCCTGGATTGACGAGTTCACAAGACCAGGGAACACATCTGCCCTTGATATGGAGTTTGAAC
GAGCCAAATCAGCTATAGAGTCTGATGTCGATTTCTGGGACAAGTTGCAGGCAGAGTTGGAGGAGATGGCGAAACGGGAT
GCTGAGGTTCACCCCTGGCTTTCTGACTATGATGACATCATGACTGCTTCCTATGATAAGGGGTACCAGTTTGAGGAGGA
GAACCCCCTGCGTGACCACCCCCAGCCTTTCGAGGAAGGGCTGCGGCGACTTCAGGATGGGGACCTGCCGAATGCTGTGC
TGCTTTTTGAGGCGGCTGTGCAGCAGGATCCTAAGCACATGGAAGCTTGGCAGTATCTGGGTACCACACAGGCAGAGAAT
GAACAAGAACTATTAGCCATCAGCGCACTACGGAAGTGTTTGGAGCTAAAGCCAGATAACCAGACAGCATTGATGGCACT
GGCTGTCAGCTTCACCAATGAGTCCCTGCAGCGACAGGCCTGTGAAACCCTGCGAGACTGGCTGCACTATACACCAGCCT
ATGCCCATCTGGTGGTGCCCAGGGAAGAAGGGGCCAGTGGCGCAGGACTGGGCCCAAGCAAGCGCATCCTGGGATCTCTG
TTGTCTGACTCCCTGTTTCTTGAAGTGAAAGAGCTCTTCCTGGCAGCTGTGCGCCTGGACCCTACAAACGTTGACCCTGA
TGTGCAGTGTGGGTTAGGGGTCCTTTTCAACCTGAGTGGGGAGTATGACAAGGCAGTGGACTGTTTCACAGCTGCCCTCA
GCGTTCGTCCCAATGACTATTTGCTGTGGAATAAACTAGGGGCCACCCTAGCCAATGGAAACCAGAGTGAAGAAGCAGTA
GCTGCATACCTTCGGGCCCTAGAGCTACAACCAGGCTATATACGGTCCCGCTATAACCTGGGCATCAGCTGCATCAACCT
TGGGGCTCATCGGGAGGCTGTGGAACACTTTTTGGAGGCCTTGAACATGCAGAGGAAAAGCCGGGGCCCTCGGGGTGAAG
GGGGCGCCATGTCAGAGAACATCTGGAGCACCCTGCGTTCGGCATTGTCCATGTTAGGCCAGAGCGATGCCTATGGGGCG
GCTGATGCCCGGGATCTGTCCGCCCTCTTAACTATGTTTGGCCTGCCCCAGTGA

Alignment

ORF - retro_mluc_189 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.84 %
• Parental protein coverage: 98.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GARRELAVAMAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGTPASEAVPKPLGVASEDE
          GARRELAVAMAMRELVEAE.G.ANPLMKLAGHFTQDKALRQEGLRPGPWPPGTPASE.VPKPLGVASEDE
Retrocopy GARRELAVAMAMRELVEAEFGRANPLMKLAGHFTQDKALRQEGLRPGPWPPGTPASEVVPKPLGVASEDE

Parental  LVAEFLQDQNEPLISRAPQTFKMDDLLAEMQEIEQSSFRQAPQRAPGVADLALSENWAQEFLAAGDAVDV
          LVAEFLQDQNEPLI.RAPQTFKMDDLLAEMQEIEQSSFRQAPQRAPGVADLALSENWAQE.LAAGDAVDV
Retrocopy LVAEFLQDQNEPLILRAPQTFKMDDLLAEMQEIEQSSFRQAPQRAPGVADLALSENWAQESLAAGDAVDV

Parental  TQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTNASDRWYNDYHPEDDLQHTASD
          TQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGT.ASD.WYNDYHPEDDLQHTASD
Retrocopy TQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTTASDHWYNDYHPEDDLQHTASD

Parental  FVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFVQQQGTSDAWVDEFTRPGNTSAL
          FVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFVQQQGTSDAW.DEFTRPGNTSAL
Retrocopy FVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQAEQWAAEFVQQQGTSDAWIDEFTRPGNTSAL

Parental  DMEFERAKSAIESDVDFWDKLQAELEEMAKRDAEVHPWLSDYDDITTASYDKGYQFEEENPLRDHPQPFE
          DMEFERAKSAIESDVDFWDKLQAELEEMAKRDAEVHPWLSDYDDI.TASYDKGYQFEEENPLRDHPQPFE
Retrocopy DMEFERAKSAIESDVDFWDKLQAELEEMAKRDAEVHPWLSDYDDIMTASYDKGYQFEEENPLRDHPQPFE

Parental  EGLRRLQDGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKPDNQTALMALA
          EGLRRLQDGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKPDNQTALMALA
Retrocopy EGLRRLQDGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRKCLELKPDNQTALMALA

Parental  VSFTNESLQRQACETLRDWLRYTPAYAHLVVPGEEGASGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR
          VSFTNESLQRQACETLRDWL.YTPAYAHLVVP.EEGASGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR
Retrocopy VSFTNESLQRQACETLRDWLHYTPAYAHLVVPREEGASGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR

Parental  LDPTNIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE
          LDPTN.DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY.RALE
Retrocopy LDPTNVDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYLRALE

Parental  LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY
          LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR.ALSMLGQSDAY
Retrocopy LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRSALSMLGQSDAY

Parental  GAADARDLSALLTMFGLPQ
          GAADARDLSALLTMFGLPQ
Retrocopy GAADARDLSALLTMFGLPQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_189 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000139197	1 retrocopy	retro_hsap_539,
Myotis lucifugus	ENSMLUG00000009346	1 retrocopy	retro_mluc_189 ,