RetrogeneDB ID: | retro_mluc_1775 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL429906:1859216..1860040(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ATE1 | ||
| Ensembl ID: | ENSMLUG00000001988 | ||
| Aliases: | None | ||
| Description: | Arginyl-tRNA--protein transferase 1 [Source:UniProtKB/TrEMBL;Acc:G1NWT5] |
Retrocopy-Parental alignment summary:
>retro_mluc_1775
TACTGCAAGAACGAGTCGGGAAGACGCTCCAATGGCATGTGTGCACATTCCAGGACAGTGCAGGACTATCAGGATCTGAT
AGACCGCGGATGGCAAAGAAGTGGAGATATGTGTACAAGCCTGTGATGAATCAAACGTGTTGTCCTCAGTATGCGATAAG
GTGCTGACCTGTACAGTTCCAGCCTTTGAAATCTCACAAGAAGGTTTTTTTAAAAAAATGTTGAAATTTCTGGCCAAAGA
GGAAATTTCCAAAGGAAGTTGTGAGGATGAGCCTATGGAGCCCACCATGGAGAATGCCGCCGCCAGTGACATGGCGTTAA
TAAATAAATTGGGTATACAGTGTGACCTCAGAAAGCTCAGTGATAACCTCAAAGAGAGCTTAGAGAGGGAAGCAAAGAAG
AAAGGAAAAAATGCAAAGAAAGAGGAATCTAACGAATTTATTCAGTCACAAGACAAAAAAGAGGAGTTGGACTCTGGGGA
ACCGTCCCACACAGCGCACACGGCTGGGCACACGGTTCCTAAGCCAGGCAAAGGGGCAGATTTGAGTAAGCCTCCCTGTC
GAAAAGCAAAGGAAATCCGGAAGGAGAGGAAGAGGTTAAAGCTCATGCAGCAGAGCCCGGCCAGACGCCTGAGGGCTTCC
AGGCTGCACGGGAACCAAAAGCCAAACCCAACCAGCCCAAATCGCTGGAAGAGTTAATTTTGAATCTTTACCAGAGGATG
CGTCACATAAGTTAGAGGTGAGGGTGGTGAGATCATCTCCACCAAGTTCTCAGTTCAAAGTCACAGTGCTGGAGTCGTTC
CAGGTACATAAACTTTACCAGGTC
ORF - retro_mluc_1775 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.07 % |
| Parental protein coverage: | 52.6 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | YCDSVAGKASCGMWAHSMTVQDYQDLIDRGWRRSG-RYVYKPVMNQTCCPQYTIRCRSLQFQPSKSHKKV |
| YC....G..S.GM.AHS.TVQDYQDLIDRGW.RSG.RYVYKPVMNQTCCPQY.IRC...QFQP.KSHKKV | |
| Retrocopy | YCKNESGRRSNGMCAHSRTVQDYQDLIDRGWQRSG<RYVYKPVMNQTCCPQYAIRC*PVQFQPLKSHKKV |
| Parental | -LK-KMLKFLAKGEISKGNCEDEPMEPSMEDAVAGDVALINKLDLQCDLKKLGDNLKESLEREVKKKGKS |
| .LK.KMLKFLAK.EISKG.CEDEPMEP.ME.A.A.D.ALINKL..QCDL.KL.DNLKESLERE.KKKGK. | |
| Retrocopy | FLK<KMLKFLAKEEISKGSCEDEPMEPTMENAAASDMALINKLGIQCDLRKLSDNLKESLEREAKKKGKN |
| Parental | TKKEESNEFIQSQDKNEELGSGEPSHAVDV--HTAPKPGKGADLSKPPCRKAKEIRKERKRLKLMQQSPA |
| .KKEESNEFIQSQDK.EEL.SGEPSH......HT.PKPGKGADLSKPPCRKAKEIRKERKRLKLMQQSPA | |
| Retrocopy | AKKEESNEFIQSQDKKEELDSGEPSHTAHTAGHTVPKPGKGADLSKPPCRKAKEIRKERKRLKLMQQSPA |
| Parental | -GGPEGFQAPREPKTKPNQPKSLEELI-FESLPEDASHKLEVRVVRSSPPSSQFKATMLESYQVYKRYQM |
| ...PEGFQA.REPK.KPNQPKSLEELI.FESLPEDASHKLEVRVVRSSPPSSQFK.T.LES.QV.K.YQ. | |
| Retrocopy | <QTPEGFQAAREPKAKPNQPKSLEELI<FESLPEDASHKLEVRVVRSSPPSSQFKVTVLESFQVHKLYQV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1775 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000001988 | 1 retrocopy |
retro_mluc_1775 ,
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