RetrogeneDB ID: retro_mluc_1733

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429896:1125329..1125741(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNAJC4
• Ensembl ID: ENSMLUG00000023122
• Aliases: None
• Description: None

Sequence

>retro_mluc_1733
TCAACTCCCCCAAAGTCTCTAGGAACCATAGCCTATCCCTGGTCTGTTCACCAAGCACACAGCTCCTGGTCACCTCCCAA
TGCACAATGCTGGGCCCGGTTTCATGGTGGGAGGCATCAGGGACCAGAGTTGAGGCGGCAGCAGCACAGACACGGCCAGA
GGGTACTGGGATACCACCTCCTATCATTCTGGCAGGCACTGGCCTGCACTACGCTGCCTTCAGGAAGCTGGAGCAGATGC
ACAGTAGCTTGATGGATGAAAAGGATCAGAAGGATCGGATCATCACAGCCATCTATGATGATACTCCGGCCGGGCCAGGG
CCAACAGAGCCAGGCTCCAGCAGGAGCAACAGCAGAGGTAGCAGCTGCAACCTCCATCCAGGCCTCCCCCAGGCCCCAGG
ATCATGCCCCCC

Alignment

ORF - retro_mluc_1733 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.86 %
• Parental protein coverage: 56.49 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ATPPKPPGAAAPPRSAHQAHSSWEPPNAQYWAQFHGVRPQRPESRRQQYRHNQRVLGYCLL-IMLAGMGL
          .TPPK..G..A.P.S.HQAHSSW.PPNAQ.WA.FHG.R.Q.PE.RRQQ.RH.QRVLGY.LL.I.LAG.GL
Retrocopy STPPKSLGTIAYPWSVHQAHSSWSPPNAQCWARFHGGRHQGPELRRQQHRHGQRVLGYHLL<IILAGTGL

Parental  HYVAFRKLEQMHRSFMDEKD---RIITTIYNDTRA-RARANRARLRQQHQQRQQLQPPPEPPPGPGIMPP
          HY.AFRKLEQMH.S.MDEKD...RIIT.IY.DT.A.RARANRARL.Q..QQR.QLQPP..PPPGP.IMPP
Retrocopy HYAAFRKLEQMHSSLMDEKDQKDRIITAIYDDTPA<RARANRARLQQEQQQR*QLQPPSRPPPGPRIMPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1733 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000023122	1 retrocopy	retro_mluc_1733 ,
Sus scrofa	ENSSSCG00000013038	1 retrocopy	retro_sscr_1193,