RetrogeneDB ID: retro_mluc_1731

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429895:3446046..3446887(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000001696
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BFAR
• Ensembl ID: ENSMLUG00000005423
• Aliases: None
• Description: None

Sequence

>retro_mluc_1731
CATGACCTCCTGGTCCACAAGGCTGTGGCCAAATGGACAGCGGAAGAAGTTGTCCTCTGGCTGGAGCAGCTGGGCCCTTG
GGCCTCTCTCTACAGAGACAGGTTTTTAGCCGAAAGAGTAAATGGAAGATTGCTTTTAACTTTAACAGAGGAAGAATTTT
CAAGGGCACCATATACCATAGAAAACAGCAGCCACAGAAGAGCCATCCTCATGGAATTGGAGCGTGTCAAAGCACTAGGC
GTGAAGCCCCCCCCAAATCTCTGGGAATATAAGGCTGTGAACCCAGGCAGGTCCCTGTTCCTGCTGTATGCCCTCAGGAG
TTCCCCCAGACTTGGTCTGCTGTCCCTCTACCTGTTTTGACTACACAGACACCTTCCTACCCTTCATCCACACCATCTGT
CCTCTACAAGAAGACAGCTCTGAGGAGGACATCTTCAAACTTCTGGGATCTTAGAGAGCCCACATGGAAGCAGGGGGAGA
GAATTTCTTTGTCAAATACTCCTTCCTTCCATACCAGCTGATTGCAGAATTTGCTTGGAACTGGCTGGAAGTCCATTATT
GGACGTCTCGGTTTCTCATCGTCAATGCCATGTTACTGTCGGTTCTGGAATTATTCTCTTTTTGGAGGATCTGGTCAAGA
AGTGAACTGAAGACTGTGCCTCAGAGGATGTGGAGCCATTTTTGGAAAGTATCAACACAGGGGCTTTTTGTGGCCATGTT
CTGGCCCCTCATTCCTCAGTTTGTTTGCAACTGTTTATTTTACTGGGCCCTGTACTTTAACCCAATTATTAACATTGATC
TTGTGGTCAAGGAAGTCCGACGGCTGGAAACCCAAGTTTTT

Alignment

ORF - retro_mluc_1731 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.07 %
• Parental protein coverage: 63.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  HWSLVHKAVAKWTAEEVVLWLEQLGPWASLYRDRFLAERVNGRLLLTLTEEEFSRAPYIIENSSHRRAIL
          H..LVHKAVAKWTAEEVVLWLEQLGPWASLYRDRFLAERVNGRLLLTLTEEEFSRAPY.IENSSHRRAIL
Retrocopy HDLLVHKAVAKWTAEEVVLWLEQLGPWASLYRDRFLAERVNGRLLLTLTEEEFSRAPYTIENSSHRRAIL

Parental  MELERVKALGVKPPQNLWEYKAVNPGRSLFLLYALRSSPRLGLLYLYLF-DYTDTFLPFIHTICPLQEDS
          MELERVKALGVK...NLWEYKAVNPGRSLFLLYALRSSPRLGLL.LYLF.DYTDTFLPFIHTICPLQEDS
Retrocopy MELERVKALGVKXXXNLWEYKAVNPGRSLFLLYALRSSPRLGLLSLYLF>DYTDTFLPFIHTICPLQEDS

Parental  SEEDIFTKLL-DLREPTWKQW-REFL-VKYSFLPYQLIAEFAWDWLEVHYWTSRFLIVNAMLLSVLELFS
          SEEDIF.KLL.DLREPTWKQ..REFL.VKYSFLPYQLIAEFAW.WLEVHYWTSRFLIVNAMLLSVLELFS
Retrocopy SEEDIF-KLL>DLREPTWKQG>REFL>VKYSFLPYQLIAEFAWNWLEVHYWTSRFLIVNAMLLSVLELFS

Parental  FWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCNCLFYWALYFNPIINIDLVVKEVRRLE
          FWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCNCLFYWALYFNPIINIDLVVKEVRRLE
Retrocopy FWRIWSRSELKTVPQRMWSHFWKVSTQGLFVAMFWPLIPQFVCNCLFYWALYFNPIINIDLVVKEVRRLE

Parental  TQVF
          TQVF
Retrocopy TQVF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1731 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000592	1 retrocopy	retro_chof_2303,
Macropus eugenii	ENSMEUG00000007566	1 retrocopy	retro_meug_86,
Myotis lucifugus	ENSMLUG00000005423	1 retrocopy	retro_mluc_1731 ,