RetrogeneDB ID: retro_mluc_17

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02063682:8588..13220(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000015035
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000024285
• Aliases: None
• Description: None

Sequence

>retro_mluc_17
ATGGAGCCTGCCGCTGCGCCACCCTCCTGCCCACACCTTGCGCCGCCACTCGGGGGTCCCAGGCCCCTGGGCGAGTTCCT
GCCGCCGCCCGAGTGCCCAGTGTTCGAGCCCAGCTGGGAGGAGTTTGCCGACCCGTTCGCCTTCATCCACAAGATCCGGC
CCATCGCTGAGCAGACAGGCATCTGCAAGGTGCGGCCGCCGCGGGATTGGCACCCACCGTTTGCATGTGATGTCGCCAAG
CTTCACTTCACGCCCCGGATCCAGAGGCTGAACGAGTTGGAGGCTCAAACCCGTGTGAAACTGAATTTCCTGGACCAGAT
CGCAAAGTACTGGGAGCTGCAGGGAAGTACTCTGAAGATCCCGCACGTGGAGAGGAAGATCCTGGACTTGTTTCAGCTCA
ACAAGTTAGTTGCAGAAGAAGGTGGATTTGCAGTTGTTTGCAAGGATAGAAAATGGACCAAAATTGCCACCAAGATGGGG
TTTGCTCCTGGCAAAGGCGCGGGATACCATATCAGAGGGCATTACGAGCGAATCCTCCACCCCTACAACCTGTTCTTGTC
TGGAGACAGTGTGAAGTGTCTGCAGAAGCCAAACCTGGCCACAGACACGAAGGACAAGGAGTATAATCCCCATGATATTC
CCCAGAGGCAGTCTGTGCAGCCCGTGGAAACCTGCCCCCAAGCCCGGCAAGCAAAGCGCATGCGAGCAGAGGCCATGAAT
ATTAAAATAGAACCAGAAGAGACAACAGAAGCCAGAACTCACAATCTGAGACGTCGAATGGGTTGTCCAACTCCGAAATA
TGAAAACGAGAAAGACATGAAGAGCAGCATCAAGCAAGAACCCATTGAGAAGAAAGAGCACCTTCTAGAAAGTGAGAGGG
AGAAACCCAAGAGTCGACCTAAGAAAACCACCAGTGCTATGGACCTGTACGTCTGCCTCTTGTGTGGCAGCGGCAGCGAC
GTGGACCGGCTGCTCCTGTGTGAATGGTGTAAAGACAGCTACCACACCTTCTGCTTGGTCCCGCCCCTGCACCACGTGCC
CAAGGGAGACTGGTGGTGTCCTAAGTGCGTGGCCCAGGAGTGTAGTAAGCCACAAGAAGCATTTGGCTTTGAGCAAGCAG
CCAGAGACTATACCCTCCGAGCTTTTGGGGAAATGGCAGATGCGTTCAAGTCTGACTACTTCAACATGCCAGTCCACATG
GTTCCCACCGAACTGGTTGAGAAGGAATTTTGGCGGCTGGTCAGCACGATTGAGGAAGACGTCACTGTGGAGTACGGAGC
CGATATTGCCTCCAAGGAGTTTGGCAGTGGCTTCCCTGTCCGCGACGGGAAGGTCAAACTCTCCCCTGAGGAGGAGGAAT
ATCTGGACAGCGGCTGGAACTTGAACAACATGCCGGTGATGGAGCAGTCGGTCCTGGCCCACATCACGGCCGACATCTGT
GGCATGAAGCTGCCCTGGCTGTACGTGGGCATGTGCTTCTCCTCCTTCTGCTGGCACATCGAGGACCACTGGAGCTACTC
CATCAACTACCTGCACTGGGGTGAGCCCAAAACCTGGTACGGCGTCCCCGGGTACGGGGCCGAGCAGCTGGAGAGCGTCA
TGAAGAGGCTGGCGCCCGAGCTCTTCGTGTCCCAGCCGGACCTGCTACACCAGCTGGTGACCATCATGAACCCCAACACC
CTGATGACGCATGAAGTGCCTGTTTACCGGACGAACCAGTGCGCGGGGGAGTTTGTGATCACGTTCCCGAGGGCCTACCA
CAGCGGCTTCAACCAAGGCTTTAACTTCGCCGAGGCCGTGAACTTCTGCACGGTGGACTGGCTGCCCCTGGGCCGCCAGT
GCGTGGAGCACTACCGCCTGCTGCACCGCTACTGCGTGTTCTCCCACGACGAGATGATCTGCCGCATGGCCGCCAAGGCC
GGCGTGCTGGACATGGTCGTGGCTTCCGCCGTCCAGGAGGATATGGCCATCATGATCGAGGACGAGCGAGCTCTCCGAGA
GACCGTCCGCAAACTGGGAGTAATTGATTCGGAAAGAATGGCTTTTGAGCTGTTGCCGGACGATGAGCGTCAGTGCATAA
AGTGCAAGACGACGTGCTTCGTGTCGGCCGTGTCCTGTGCCTGCAAGCCCGGCCTGCTGGTGTGCCTGCACCACGTGCCC
GAGTTGTGCTCCTGTCCTCCTGGCAAATACAAGCTGCAATACAGATACACTCTGGACGACCTCTACCCCATGATGAACGC
ACTGAAGCTGCGAGCCGAGTCCTACAATGAATGGGCCGTGACTGTGAACGAAGCTCTGGAGGCAAAGATCAGCAAGAAGA
AGAGCCTCGCCAGCTTGAAGGCTCTGATCGAAGAGTCAGAGATGAAGAAGTTCCCGGACAACGACCTCCTGCGCCACCTG
CGCCTGGTCACGCAGGACGCGGAGAAGTGTGCCTCTGTGGCCCAGCAGCTGCTCAACGGGAAAAGGCAGACCAGATTCCG
ATCTGGGGGAGGAAAGTCCCCGAACCAGCTGACGGTGAGCGAGCTCCGGCAGTTCGTGACACAGCTGTACGCGCTCCCCT
GCGCCCTCAGCCAGGCGCCGCTGCTGAAGGACCTTCTGAGCCGCGTGGAAGATTTCCAGCAGCAGAGCCAGAAGCTGCTC
TCCGAGGAGGTGCCCCGTGCAGCCGAGCTGCAGGAGCTGCTGGACGTCAGCTTTGAGTTTGACGTGGACCTCCCGCAGCT
CACGGAGGTGCGCCTCCGCCTGGAGCAGGCCCGTTGGCTGGAGGAGGTGCAGCAGGCGTGCCTGGACCCCAGCTCCCTCA
CCTTAGGTGATATGAGGCGCCTCATAGACCTGGGGGTGGGCCTGGCCCCCTACGCAGCCGTGGAGAAAGCCATGGCCAGC
CTCCAGGAGCTGCTCACAGTGTCTGAGCACTGGGACGACAAGGCCAAGAGCCTGCTCAGAGCCAGGCCCCGGCAGTCGCT
GACCAGCCTGGCCATGGCTGTGAAGGAGATGGAGGAGATCCCCACCTACCTGCCCAGCCGGGCGGTTCTGAAGGACTCGG
TGCAGAGAGCCAGGGACTGGCTGCAGGATGTGGAGGCCCTGCAGGCTGGAGGGCGTGTGCCCGTGTTGGACACACTGGTG
GAGCTTGTCACGCGAGGCCGCTGCATCCCTGTGCACCTGAGCCCCCTGCCACGGCTGGAGTCCCTCGTAGCTGAGGTCCA
GGCCTGGAAGGAATGTGCTGCCAACACATTCTTGATGGAGAACTCCCCGTACTCCCTCCTGGAGGTGCTGTGTCCTCGCT
GTGATATCGGCCTTTTGGGATCAAAGCGGAAGCAGAGGAAGTTCAAGAAGCCCTTGCCCAACGGGAAGAAGCGGAGCAGC
CGGCTGGAGAGCCTGAGCGACCTGGAGCGGGCCCTGGCCGAGAGCAAGGAGACAGCCGCAGCTATGGCGGCCCTGGGGGA
AGCCCGCCTTCAGGAGATGGAGGCCCTGCAGTCCCTCCGCCTGGCCAATGAGGGGAAGCTGCTGGCGCCCGGCCAGGAGG
CGGAGACGAAGGTCTGCCTGTGCCAGAAGGCCCCGGCCGCCCCGATGGTCCAGTGCGAGCTCTGCCGGGACGCCTTCCAC
ACCGGCTGTGTGGCAGTGCCCGCCGCCTCGCCAGGCCCCCGCATCTGGCTGTGTCCCCTCTGCCTGCGCTCAGAGAAGCC
TCCTCTGGAGAAGATCCTGCCACTGCTGGCCTCCCTGCAGCGCCTCCGCGTGCGCCTGCCCGAGGGCGACGCCCTGCGCT
ACATGATGGAGAGGACGGAGAGCTGGCAGCACAGGGCCCAGCAGCTGCTGGCGTCCGGGAGCCTCACGCCCGTGCAGGCG
CGCACAGGCCCCGGGATGTCCCACAGCAGGTGGCCAGCCGCGGCGGGACCGGCGTCCGAGACCAGCAAGGCGCCTCAGCC
TCCGGGCACCGCGTCCTCCGAGCCCGGCGACCAGGACAGCAGGAGCTCGTCTCTGCAGGCTCCCTTCTCGGCGGGATGGA
GCTGCATTCCCCTGCACGGTGTGAGCCCAGAAGTGAGCGAGCTGCTGATGGAGGCGCAGCTGCTCCAGGTAACCCTTCCT
GAGATGCAGGAGCTTTACCAGACGTTGCTCGCGAAGCCCAGCCCTGCCCAGCAGATGGGCCGCAGCTCCCCAGGCAGACC
GGGCGGCGAGAAGAGCGACTGCTGCCGGGCGAAGCGAGAGGGAAGCGGCAGCCTGGAGAGGAAGCTGAAGCGCCGCCCCG
AGAGAGACCGCCTCGCCGGCGAGCGCTGGGGCCAGGTGCGGAAAGTGTGGGCCCCGGGGAGGAAGAGGATCAGACTGAGC
ACCCCCCTGGACACGGACACTTTCCAGTTAGAGAGCGAGCGCGACTACGCGCCGGTCCGCTCCGCCGACACCCACTCCCT
GCGCTCGGACACCTCCTCCCCGGAGCAGGAGGACTCTGAGGACGAAGACGCCATCTGCCCGGCTAGGAGCTGCCTGCAGC
CGGAGGGAGACGAGGTGGACTGGGTCCAGTGTGATGGCAGCTGCAACCAGTGGTTCCATCAGGTCTGTGTTGGTGTCTCC
CCAGAGACGGCGGCGAAGGAGGACTACGTCTGTGCGCGCTGCGCCGGGACAGCCGTGCCGAGCCGGAAATAA

Alignment

ORF - retro_mluc_17 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.6 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PQDWQPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKL
          P.DW.PPFACDV.KLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKL
Retrocopy PRDWHPPFACDVAKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKL

Parental  VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILHPYSLFLSGDSLRCLQKPNLATDTKDK
          VAEEGGFAVVCKDRKWTKIATKMGFAPGK..G.HIRGHYERILHPY.LFLSGDS..CLQKPNLATDTKDK
Retrocopy VAEEGGFAVVCKDRKWTKIATKMGFAPGKGAGYHIRGHYERILHPYNLFLSGDSVKCLQKPNLATDTKDK

Parental  EYKPHDIPQRQSVQPVETCPPARRAKRMRAEAMNIKIEPEETTEARTHNLRRRMGCPTPKYENEKDMKSS
          EY.PHDIPQRQSVQPVETCP.AR.AKRMRAEAMNIKIEPEETTEARTHNLRRRMGCPTPKYENEKDMKSS
Retrocopy EYNPHDIPQRQSVQPVETCPQARQAKRMRAEAMNIKIEPEETTEARTHNLRRRMGCPTPKYENEKDMKSS

Parental  IKQEPMEKKEHLLESEREKPKSRPKKTTSAVDLYVCLLCGSGSDEDRLLLCDGCDDSYHTFCLVPPLHDV
          IKQEP.EKKEHLLESEREKPKSRPKKTTSA.DLYVCLLCGSGSD.DRLLLC..C.DSYHTFCLVPPLH.V
Retrocopy IKQEPIEKKEHLLESEREKPKSRPKKTTSAMDLYVCLLCGSGSDVDRLLLCEWCKDSYHTFCLVPPLHHV

Parental  PKGDWRCPKCVAQECSKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVST
          PKGDW.CPKCVAQECSKPQEAFGFEQAARDYTLR.FGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVST
Retrocopy PKGDWWCPKCVAQECSKPQEAFGFEQAARDYTLRAFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVST

Parental  IEEDVTVEYGADIASKEFGSGFPVRDGKVKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPW
          IEEDVTVEYGADIASKEFGSGFPVRDGKVKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPW
Retrocopy IEEDVTVEYGADIASKEFGSGFPVRDGKVKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPW

Parental  LYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLESVMKRLAPELFVSQPDLLHQLVTIM
          LYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGY.AEQLESVMKRLAPELFVSQPDLLHQLVTIM
Retrocopy LYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYGAEQLESVMKRLAPELFVSQPDLLHQLVTIM

Parental  NPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCV
          NPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCV
Retrocopy NPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCV

Parental  FSHDEMICRMAAKAGVLDVVVASTVQKDMAIMIEDERALRETVRKLGVIDSERMDFELLPDDERQCIKCK
          FSHDEMICRMAAKAGVLD.VVAS.VQ.DMAIMIEDERALRETVRKLGVIDSERM.FELLPDDERQCIKCK
Retrocopy FSHDEMICRMAAKAGVLDMVVASAVQEDMAIMIEDERALRETVRKLGVIDSERMAFELLPDDERQCIKCK

Parental  TTCFMSAVSCACKPGLLVCLHHVPELCACPPGKYKLRYRYTLDDLYPMMNALKLRAESYNEWAVTVNDAL
          TTCF.SAVSCACKPGLLVCLHHVPELC.CPPGKYKL.YRYTLDDLYPMMNALKLRAESYNEWAVTVN.AL
Retrocopy TTCFVSAVSCACKPGLLVCLHHVPELCSCPPGKYKLQYRYTLDDLYPMMNALKLRAESYNEWAVTVNEAL

Parental  EAKISKKQSLASLKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRFRSGGGKSPNQ
          EAKISKK.SLASLKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRFRSGGGKSPNQ
Retrocopy EAKISKKKSLASLKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRFRSGGGKSPNQ

Parental  LTVSELRQFVTQLYALPCALSQAPLLKDLLSRVEDFQQQSQKLLSEEAPRAAELQELLDVSFEFDVDLPQ
          LTVSELRQFVTQLYALPCALSQAPLLKDLLSRVEDFQQQSQKLLSEE.PRAAELQELLDVSFEFDVDLPQ
Retrocopy LTVSELRQFVTQLYALPCALSQAPLLKDLLSRVEDFQQQSQKLLSEEVPRAAELQELLDVSFEFDVDLPQ

Parental  LTEVRVRLEQARWLEEVQQACLDPSSLTLDDMRRLIDLGVGLAPYAAVEKAMARLQELLTVSEHWDDKAK
          LTEVR.RLEQARWLEEVQQACLDPSSLTL.DMRRLIDLGVGLAPYAAVEKAMA.LQELLTVSEHWDDKAK
Retrocopy LTEVRLRLEQARWLEEVQQACLDPSSLTLGDMRRLIDLGVGLAPYAAVEKAMASLQELLTVSEHWDDKAK

Parental  SLLRARPRQSLTSLATAVKEMEEIPAYLPSGAVLKDSVQRARDWLQDVEALQAGGRVPVLDTLVELVTRG
          SLLRARPRQSLTSLA.AVKEMEEIP.YLPS.AVLKDSVQRARDWLQDVEALQAGGRVPVLDTLVELVTRG
Retrocopy SLLRARPRQSLTSLAMAVKEMEEIPTYLPSRAVLKDSVQRARDWLQDVEALQAGGRVPVLDTLVELVTRG

Parental  RCIPVHLSPLPRLESLVAEVQAWKECAANTFLMENSPYSLLEVLCPRCDIGLLGSKRKQRKLKEPLPNGK
          RCIPVHLSPLPRLESLVAEVQAWKECAANTFLMENSPYSLLEVLCPRCDIGLLGSKRKQRK.K.PLPNGK
Retrocopy RCIPVHLSPLPRLESLVAEVQAWKECAANTFLMENSPYSLLEVLCPRCDIGLLGSKRKQRKFKKPLPNGK

Parental  KRSSRLESLSDLERALAESKETAAAMAALGEARLREMEALQSLRLANEGKLLAPGREAETKVCLCQKAPA
          KRSSRLESLSDLERALAESKETAAAMAALGEARL.EMEALQSLRLANEGKLLAPG.EAETKVCLCQKAPA
Retrocopy KRSSRLESLSDLERALAESKETAAAMAALGEARLQEMEALQSLRLANEGKLLAPGQEAETKVCLCQKAPA

Parental  APMVQCELCRDAFHTGCVAVPGASPGPRVWLCPLCRRSEKPPLEKILPLLASLQRLRVRLPEGDALRYMI
          APMVQCELCRDAFHTGCVAVP.ASPGPR.WLCPLC.RSEKPPLEKILPLLASLQRLRVRLPEGDALRYM.
Retrocopy APMVQCELCRDAFHTGCVAVPAASPGPRIWLCPLCLRSEKPPLEKILPLLASLQRLRVRLPEGDALRYMM

Parental  ERTVSWQHRAQQLLASGSLTPMQAHTGPGMSHGRWPAAAGPASETSKAPQPPGTASSEPGDQDSRSSSLQ
          ERT.SWQHRAQQLLASGSLTP.QA.TGPGMSH.RWPAAAGPASETSKAPQPPGTASSEPGDQDSRSSSLQ
Retrocopy ERTESWQHRAQQLLASGSLTPVQARTGPGMSHSRWPAAAGPASETSKAPQPPGTASSEPGDQDSRSSSLQ

Parental  APFSVGWSCIPLHGVSPEVSELLMEAQLLQVTLPEIQELYQTLLAKPSPAQQTGRSSPGRPGSEKSDCCR
          APFS.GWSCIPLHGVSPEVSELLMEAQLLQVTLPE.QELYQTLLAKPSPAQQ.GRSSPGRPG.EKSDCCR
Retrocopy APFSAGWSCIPLHGVSPEVSELLMEAQLLQVTLPEMQELYQTLLAKPSPAQQMGRSSPGRPGGEKSDCCR

Parental  AKREGSSSLERRLKRRPERDGLAGERWGQVRKVWAPGRKRIRLGPPQDTDTFQLESERGYAPVRSADTHS
          AKREGS.SLER.LKRRPERD.LAGERWGQVRKVWAPGRKRIRL..P.DTDTFQLESER.YAPVRSADTHS
Retrocopy AKREGSGSLERKLKRRPERDRLAGERWGQVRKVWAPGRKRIRLSTPLDTDTFQLESERDYAPVRSADTHS

Parental  LPSDTSSSEQEDSEDEDAICPAGSCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPETAAKEDYVCARCAG
          L.SDTSS.EQEDSEDEDAICPA.SCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPETAAKEDYVCARCAG
Retrocopy LRSDTSSPEQEDSEDEDAICPARSCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPETAAKEDYVCARCAG

Parental  TAAPSRK
          TA.PSRK
Retrocopy TAVPSRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_17 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000024285	1 retrocopy	retro_mluc_17 ,