RetrogeneDB ID: retro_mluc_1691

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429886:3069405..3070481(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: S100PBP
• Ensembl ID: ENSMLUG00000000764
• Aliases: None
• Description: None

Sequence

>retro_mluc_1691
TCCGGAGATATGATGTGCCCACTAGTGCCCTCTAGGGGTTCCTTGGATGAGGATGTATCGGATGACTCCTTGCTGGACCT
GAGTGAAGGAGAAGATGATGGCCATTTCAGCTTCACGGAGGAAGAGATAGAGAAGTACTTGAGGGATGATGATCTACAGA
TGAGGACGAGGAAAATACGTTGGACAGCCTTGGACCAGTAGCTGAGACTCCTGGCCTCTTCAAATTACCTCAAAGTACAT
CAGTTGGTCAGGGACCAACTCCTACGAAACCATTAAACAGACCCTTTGCACTAGAAAAGAATCTTGTAAAATTAACAGTT
GTTGCACCATTTAATCCAACAGCTTGTGATGTTGTGCTTAATAAGGACAAGACTGATACATCCAAAGATATTGGAAAACC
CTCTTCCCTTGGAGAAGGGATGAGAGAAGATGGTCTTAGCCCAAATAAGAGCAAACTTTGCACTAATTCTGAAGGGATCG
TCCCAAATAACTCTTCCTGGGATGGGCCCTCGCTCCCTTCTCCTTCAAGTAATAACTTTCAACAAACTGTCCCTGAAAAA
AGTATGCCTGATAGTTAGAAACCTACACCTGTAACCACTCAGATCTTGGACCATTCAGAGACTCCTCATTTAGGGTCATC
CTGGAGAAACGGATCACATAAATCAAGTTGTGAAATGAAGTTCCCAGTTGTTACCAGTTCACCAAACAAAGATATTCTTG
ACAAGGATTCTGGGAAGCTGAAAGCTCCTGAGAGAATAGGCAAAGTCATTCCTGTTCTGCAAGCCAAAACTAGGAATAAT
GTTTCGACGTTTTCACAATGAGATCTAGAACGGAAGAAGCAAACTTACGTCAGGAGTGTTTTTGCTCATATAAAAGACTC
AGTGGATTCTAACCAAGGTGCCTTGGTGGAACTGTGTTCTTTGATGGATCAAGTTCATCATATGCATAACCATCCGCATC
CTTCACACCTCACCATTCAAAACTATGCCCGGTTCCGACAGAAACCTCTGGAAAGATACAGTCTGACTCAGTGGGTTGAC
AGGAACGAGCGAAGCCACCAGCGGTTCCAGAGTCTC

Alignment

ORF - retro_mluc_1691 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.46 %
• Parental protein coverage: 97.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SPDMMCPLVPSRGSLDEDVLDDSLLDLSEGEEDDGHFSFTEEEIEKYLRDDDL-SDEDEENSLDSRGPVA
          S.DMMCPLVPSRGSLDEDV.DDSLLDLSEGE.DDGHFSFTEEEIEKYLRDDDL..DEDEEN.LDS.GPVA
Retrocopy SGDMMCPLVPSRGSLDEDVSDDSLLDLSEGE-DDGHFSFTEEEIEKYLRDDDL<TDEDEENTLDSLGPVA

Parental  ETPGLFKLPQSTLVGQ--TPAKPLNRPFALEKNLVKLTVVAPFNPTACDVVLNKDKTDTPKDIEKRSSLG
          ETPGLFKLPQST.VGQ..TP.KPLNRPFALEKNLVKLTVVAPFNPTACDVVLNKDKTDT.KDI.K.SSLG
Retrocopy ETPGLFKLPQSTSVGQGPTPTKPLNRPFALEKNLVKLTVVAPFNPTACDVVLNKDKTDTSKDIGKPSSLG

Parental  EGMREDGLSPKKSKLCTNSEGIIPNNSSWDGPSLPSPSSNNFQQTVREKSMPDSKKPIPVITQILDHSET
          EGMREDGLSP.KSKLCTNSEGI.PNNSSWDGPSLPSPSSNNFQQTV.EKSMPDS.KP.PV.TQILDHSET
Retrocopy EGMREDGLSPNKSKLCTNSEGIVPNNSSWDGPSLPSPSSNNFQQTVPEKSMPDS*KPTPVTTQILDHSET

Parental  PHLGSSWRNGSHKSSCEMKFPVVSSSSNKKKDVLDKDSGKLKVPERIGKVIPVLQAKTRTNVSTFSQSDL
          PHLGSSWRNGSHKSSCEMKFPVV.SS.N..KD.LDKDSGKLK.PERIGKVIPVLQAKTR.NVSTFSQ.DL
Retrocopy PHLGSSWRNGSHKSSCEMKFPVVTSSPN--KDILDKDSGKLKAPERIGKVIPVLQAKTRNNVSTFSQ*DL

Parental  ERKKQTYVRSVFAHIKDSVDSNQGALVELCSLMDQVHHMHNHPHPSDLTIRNYARFRQKPLERYSLTQWV
          ERKKQTYVRSVFAHIKDSVDSNQGALVELCSLMDQVHHMHNHPHPS.LTI.NYARFRQKPLERYSLTQWV
Retrocopy ERKKQTYVRSVFAHIKDSVDSNQGALVELCSLMDQVHHMHNHPHPSHLTIQNYARFRQKPLERYSLTQWV

Parental  DRNKRSHQRFQSL
          DRN.RSHQRFQSL
Retrocopy DRNERSHQRFQSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1691 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000537	1 retrocopy	retro_dnov_1346,
Erinaceus europaeus	ENSEEUG00000006053	1 retrocopy	retro_eeur_439,
Myotis lucifugus	ENSMLUG00000000764	1 retrocopy	retro_mluc_1691 ,
Monodelphis domestica	ENSMODG00000017396	2 retrocopies	retro_mdom_1633, retro_mdom_62,
Tursiops truncatus	ENSTTRG00000014993	1 retrocopy	retro_ttru_89,