RetrogeneDB ID: retro_mluc_1680

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429884:1595258..1596757(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023664
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZCWPW1
• Ensembl ID: ENSMLUG00000009644
• Aliases: None
• Description: None

Sequence

>retro_mluc_1680
ATGATGACAACATTGCAGAGTAAAGAAGAGTATGGGAAAGGATCAAAAAAACCCTTTATCCCACCTGCACAAAAAGTGCA
TAGCCTGATGCCCTATAACCCTAACTCACACAAAGAGGAGACTCTGGGGATCAGTTCCCTGGAGGCAGAGGCCGGACCAA
ACCTGCTAAAGGCCAAGTTAGAGAAGAAGGAGGAGGAAGCAACCACAGTGAATGGTCCATGCAGTGATCAGGAGAAAAAG
TAAAGGTTCAAGACAACAAGCAAGCAGAGAAGAAAGAAAAGGAAAAATCAAATCTTACCGATGAAGAGTTTGAGGAGATT
GTCCAGATTGTTCTACAGAAGTCCCTCCAAGAGTGCTTGGGTATGGCTTATGAGACTTCCTGTGCCCAGCCCATAAGACA
TACCCAGTTAGACAAGGAACCAGGAATTGCTTCTTCTACTACTGATAATGATAATGCTGATAGAGAGTGGGTAACGGTAC
CTCATATTCTAGAGATTTCAGCCTCTCAGGAAGATGGAATAATCCCATCTAAGCCAGACCAGCCAGATCTTGCATCATCT
GAGAAGAAATTCAGTAAACTCTCCTTAAGGAGAAGAAAGAAAAAAGCTCAAGATGAGAAAATGAAGAAAGCCCAGCGAGG
ACATGAGCATAAACAGAAAGACCAACTGAAGAAAATGGTTCAGGATCATGCTCAGATCAGGGACCAACAAAAAGGAGAGG
AAAGTGGTTTTGGTCAGTGTCTAGTCTGGGTCCAGTGTTCCTCCCCAAACTGTGGGAAATGGAGGCGGCTTCATGGGAAC
GCTGACCCCTCAGTCCTTCCAGATAATTGGTCCTGTGACCAGAATACAGACTTGGAGTACAATCACTGTGATATCCCTGA
GGAGACCTGGATAGGGCATGAAAGTGATGTGGCCTATGCCTCCTACATCCCAGGATCCATCATCTGGGCCAAGCAATATG
GTTACCCCTGGTGGCCAGGCATGGTAGAATCTGACCCTGACCTGGGGGAATATTTTCTTTTTGCTTCTCATCTTGATTCC
TTGCCGTCTAAGTACCATGTGACATTTTTTGGAGAAACAGTCTCTCGTGCTTGGATCCCAGTCAATATGCTAAAGAACTT
TCAGGAGCTGTCTCTGGAGCTAGCTGGAGTGAAAAAGTGCAGAAACAAGGACTGCAGCCAGAAACTGGGGGCAGCCATGA
TAATGGCTCAGGAGGCAGAACAGATCGGTATTCAGGAGCGGGTTAAATTGTTTGGTTTCTGGAGCAGATACAGTGGATCT
GACAATAATGGGGAAGGAAAAGACTTAATGCTCACTGGGGCTAAGAGCCCAGATTACTTCTTGGAGAAAGAAGAGGAAGA
GTCAGACTTGGAGAAGGAGGAAGAGGAGGGAGAGAAAAAAGACCCAACTTTGCCCAGTCCCAAGCCAGCCAAAATTCAGA
CAAAACCCCCCAAGGCAAGAGGCATAGCAGATGGACGAGATGGGACTCAGCAAGGGAAG

Alignment

ORF - retro_mluc_1680 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.91 %
• Parental protein coverage: 92.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MMTTLQSKEEYGKGSKKPFIPPAQKVHSLMPYNPNSHKEETLGISSLEAEAGPNLLKAKLEKKEEEATTV
          MMTTLQSKEEYGKGSKKPFIPPAQKVHSLMPYNPNSHKEETLGISSLEAEAGPNLLKAKLEKKEEEATTV
Retrocopy MMTTLQSKEEYGKGSKKPFIPPAQKVHSLMPYNPNSHKEETLGISSLEAEAGPNLLKAKLEKKEEEATTV

Parental  NGPCSDQEKK-VKVQDNKQAEKKEKEKSNLTDEEFEEIVQIVLQKSLQECLEIESSLDFAETSCAQPIRH
          NGPCSDQEKK.VKVQDNKQAEKKEKEKSNLTDEEFEE......Q..LQ..L.........ETSCAQPIRH
Retrocopy NGPCSDQEKK<VKVQDNKQAEKKEKEKSNLTDEEFEE----IVQIVLQKSLQECLGMAY-ETSCAQPIRH

Parental  TQLDKEPGIASSTTDNDNADREWVTVPHILEISASQEDGIIPSKPDQPDLASSEKKFSKLSLRRRKKKAH
          TQLDKEPGIASSTTDNDNADREWVTVPHILEISASQEDGIIPSKPDQPDLASSEKKFSKLSLRRRKKKA.
Retrocopy TQLDKEPGIASSTTDNDNADREWVTVPHILEISASQEDGIIPSKPDQPDLASSEKKFSKLSLRRRKKKAQ

Parental  -EKMKKAQRGHEHKQKDQLKKMVQDHAQIRDQQKGEESGFGQCLVWVQCSSPNCGKWRRLHGNADPSVLP
          .EKMKKAQRGHEHKQKDQLKKMVQDHAQIRDQQKGEESGFGQCLVWVQCSSPNCGKWRRLHGNADPSVLP
Retrocopy DEKMKKAQRGHEHKQKDQLKKMVQDHAQIRDQQKGEESGFGQCLVWVQCSSPNCGKWRRLHGNADPSVLP

Parental  DNWSCDQNTDLEYNHCDIPEETWIGHESDVAYASYIPGSIIWAKQYGYPWWPGMVESDPDLGEYFLFASH
          DNWSCDQNTDLEYNHCDIPEETWIGHESDVAYASYIPGSIIWAKQYGYPWWPGMVESDPDLGEYFLFASH
Retrocopy DNWSCDQNTDLEYNHCDIPEETWIGHESDVAYASYIPGSIIWAKQYGYPWWPGMVESDPDLGEYFLFASH

Parental  LDSLPSKYHVTFFGETVSRAWIPVNMLKNFQELSLELAGVKKCRNKDCSQKLGAAMIMAQEAEQIGIQER
          LDSLPSKYHVTFFGETVSRAWIPVNMLKNFQELSLELAGVKKCRNKDCSQKLGAAMIMAQEAEQIGIQER
Retrocopy LDSLPSKYHVTFFGETVSRAWIPVNMLKNFQELSLELAGVKKCRNKDCSQKLGAAMIMAQEAEQIGIQER

Parental  VKLFGFWSRYSGSDNNGEGKDLMLTGAKSPDYFLEKEEEESDLEKEEEEGEKKNFFLFLKKNVSKIQTKP
          VKLFGFWSRYSGSDNNGEGKDLMLTGAKSPDYFLEKEEEESDLEKEEEEGEKK...L...K...KIQTKP
Retrocopy VKLFGFWSRYSGSDNNGEGKDLMLTGAKSPDYFLEKEEEESDLEKEEEEGEKKDPTLPSPK-PAKIQTKP

Parental  PKARVGVWGDAGIADGR
          PKAR....G..G...G.
Retrocopy PKARGIADGRDGTQQGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1680 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009644	1 retrocopy	retro_mluc_1680 ,
Ictidomys tridecemlineatus	ENSSTOG00000007532	1 retrocopy	retro_itri_330,