RetrogeneDB ID: retro_mluc_1648

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429877:666886..667762(+)
• Located in intron of: ENSMLUG00000012629

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZGPAT
• Ensembl ID: ENSMLUG00000005264
• Aliases: None
• Description: None

Sequence

>retro_mluc_1648
ATGGACGAGGAGAGCCTCCAGACCGCACTCCGGACCTACGGCGCCCAGCTGCAGCAGGTGGAGCTGGCCCTGGGTGCCGG
CCTGGGTCCCGCCGAGCTGGCCGACCTGCGCCAGCTCCAGGGAGACCTGAAGGAGCTGATCCAGCTCACCGAGGCCAGCC
TGGTGTCTATCCTGAAGAGCAAGCTGCTGGCCACCCTGGACGGAGAGCGCCCAGAGCAGGACGACGCCGAGTACCTGGCT
TTCCAGAAGGCTGTTGCTGAAGTAGTGGAGGCGCCAGTAGCCCCCAGGGCAGAACTGGACACTGTACCTGAAAGAGAGGC
TGGGCCAGGACCCAGCCAGCCTGGACTGGAGGAGGATGAAGGGGAGGACACGGAGGATGTGGGAGAGCTGAGTGGGACGA
AGGTGAACGCCCCCTACCGCAGTTCCTGGGGCACCCTGGAGTATCACAATGCCATGATCGTGGGCACGGAAGAGGCAGAG
GACGGCTCCGCAGGTGTGCGGGTGCTCTACCTGTACCCCACCCACAAGTCCCTGAAGCCCTGTCCCTTCTTCCTGGAGGG
CAAGTGCCACTTCCTGGACAACTGCAGGTTCTCCCACGGGCAGGTGGTCTCTGTGGATGAGCTGCGCCCCTTCCAGGACC
CGGACCTGAGCTCCCTGCAGGCTGGTTCTGCATGTCTGGCCAAGCAACCAGATGGTCTCTGGTACCCAGCACGGATCACT
GATATGGACAGCGGCTACTACACAGTCAAGTTTGACTCGCTGCTGTTGAAGGAGGCCGTTTTGGAGGGGGACAGCATCCT
TCCCCCACTGCGCCCAGAGCCTGCAGTATCCTCTGACTCAGACAGTGGTGACCCGGACGATTCCAGCTATGCCAGA

Alignment

ORF - retro_mluc_1648 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.55 %
• Parental protein coverage: 54.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDEESLQTALRTYGAQLQQVELALGAGLDPAELADLRQLQGDLKELIQLTEASLVSVRKSKLLATLDGER
          MDEESLQTALRTYGAQLQQVELALGAGL.PAELADLRQLQGDLKELIQLTEASLVS..KSKLLATLDGER
Retrocopy MDEESLQTALRTYGAQLQQVELALGAGLGPAELADLRQLQGDLKELIQLTEASLVSILKSKLLATLDGER

Parental  PEQDAAEYLAFQKAVAEAMEAPVAPRAELDTVPERKAGPGPSHPGLEEDEGEDTEDEGELSGTKVNAPYH
          PEQD.AEYLAFQKAVAE..EAPVAPRAELDTVPER.AGPGPS.PGLEEDEGEDTED.GELSGTKVNAPY.
Retrocopy PEQDDAEYLAFQKAVAEVVEAPVAPRAELDTVPEREAGPGPSQPGLEEDEGEDTEDVGELSGTKVNAPYR

Parental  SSWGTLEYHNAMIVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFLDSCRFSHGQVVPVDELRP
          SSWGTLEYHNAMIVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKC.FLD.CRFSHGQVV.VDELRP
Retrocopy SSWGTLEYHNAMIVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKCHFLDNCRFSHGQVVSVDELRP

Parental  FQDPDLSSLQAGSACLAKQPDGLWYPARITDMDSGYYTVKFDSLLLKEAVLEGDSILPPLRPEPAVSSDS
          FQDPDLSSLQAGSACLAKQPDGLWYPARITDMDSGYYTVKFDSLLLKEAVLEGDSILPPLRPEPAVSSDS
Retrocopy FQDPDLSSLQAGSACLAKQPDGLWYPARITDMDSGYYTVKFDSLLLKEAVLEGDSILPPLRPEPAVSSDS

Parental  DSGDPDDSSYAR
          DSGDPDDSSYAR
Retrocopy DSGDPDDSSYAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1648 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005264	1 retrocopy	retro_mluc_1648 ,