RetrogeneDB ID: retro_mluc_1599

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:1837437..1838282(+)
• Located in intron of: ENSMLUG00000015758

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDC123
• Ensembl ID: ENSMLUG00000010474
• Aliases: None
• Description: None

Sequence

>retro_mluc_1599
CACGCTGTGTTCCTAAGCCTTCCCGTCAAGAGTGTCCTTCTTCCACTTCTTCCGAATGTGAAGGATTATTTACTCCAAGA
GGGAACTCTGGTGGTCCGAGGAAGAGAAGCTCCTCTAACAGCTTCTCAGCCGGATGGGGATGATGAGGCAGAAGAAAGGC
AGTGGTTGGATGAGGAAAACAATCACACGTAAGCACCCGAATTTCCTGAGTTCACCACTAGACTCCAAGAAGCTAGCAAT
GCCCTGGGGGCAGTGTATTTCCTAAGCTTACCTGGAGTACCCCAAGGGATGAGTACTGGATAGCAATGAATCGTTTTCTG
AAATCTAAAACCCTCAACAACATATTTCTACTGCTCAGGAGTTCTGCTTCCATCACTTGTGACTTCATTCAGCCAGTTGT
CCATTGCACTGATGACTCCTCAGATGCTGGTATGGAATATGAGCTTTGAAAATAGTGTGAATTAATTACTGGGGCCGAGT
GCCGATATTTTCTCAAGGAAAACAAGCTTATTGGTATTTCTCAGAGGGACTGCTCACAAGGCTATGATCATATTTCTAAA
CAAAGGGATGAGATTTTCAGATGTATACAAGACTTCTTGAAGAAACACAGATAGTATAAATTCTTAGATGAAGACTTTGT
ATTGGATATATATAAAGACAGTAGGGGGGAGGTGTGGCTAATCAATTTTAATCCGTTGGGTGAAGTAACAGATTCACTGC
TGTTTACTTGGGAAGAACTAATATCTGGAAGAAAATTAAAAGGTTATTTTAGGGAAGGAGGGGCTCTGAAGCAGGATTCT
ACAGCTTTCCATGGCACAAACAGTGAAGTTACAGTTCAACCCAGT

Alignment

ORF - retro_mluc_1599 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.98 %
• Parental protein coverage: 84.82 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YPLFRNITIKSVILPLPQNVKDYLLDDGTLVVSGREDPPTCSQPDSDDEAEEIQWSDDENTATLTAPEFP
          ...F.....KSV.LPL..NVKDYLL..GTLVV.GRE.P.T.SQPD.DDEAEE.QW.D.EN..T..APEFP
Retrocopy HAVFLSLPVKSVLLPLLPNVKDYLLQEGTLVVRGREAPLTASQPDGDDEAEERQWLDEENNHT*-APEFP

Parental  EFTTTVQEAINSLG-GSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTD
          EFTT..QEA.N.LG.GSVFPKL.WS.PRD.YWIAMN..LK.KTL..IFLL..SS..IT.DF.QP..HCTD
Retrocopy EFTTRLQEASNALG<GSVFPKLTWSTPRDEYWIAMNRFLKSKTLNNIFLLLRSSASITCDFIQPVVHCTD

Parental  DSPDPCMEYELVLRKWCELIPGAEFRCFVKENKLIAISQRDYTQYYDHISKQKEEICRCIQGFFKKHIQY
          DS.D..MEYEL...K.CELI.GAE.R.F.KENKLI.ISQRD..Q.YDHISKQ..EI.RCIQ.F.KKH..Y
Retrocopy DSSDAGMEYEL*--K*CELITGAECRYFLKENKLIGISQRDCSQGYDHISKQRDEIFRCIQDFLKKHR*Y

Parental  KFLDEDFVFDIYRDSRGKVWLIDFNPFGEVTDSLLFTWEELISERNLKGDFSEGDALEQDSPAFRCTNSE
          KFLDEDFV.DIY.DSRG.VWLI.FNP.GEVTDSLLFTWEELIS.R.LKG.F.EG.AL.QDS.AF..TNSE
Retrocopy KFLDEDFVLDIYKDSRGEVWLINFNPLGEVTDSLLFTWEELISGRKLKGYFREGGALKQDSTAFHGTNSE

Parental  ATVQPS
          .TVQPS
Retrocopy VTVQPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1599 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000025803	1 retrocopy	retro_fcat_1234,
Myotis lucifugus	ENSMLUG00000010474	1 retrocopy	retro_mluc_1599 ,
Mustela putorius furo	ENSMPUG00000001047	1 retrocopy	retro_mputfur_1047,