RetrogeneDB ID: retro_mluc_1560

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429862:2061500..2061725(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM134
• Ensembl ID: ENSMLUG00000005143
• Aliases: None
• Description: None

Sequence

>retro_mluc_1560
AACCTGGAGAATGATGAGTATGGAGCCCGGGTGTCTCTGGAGCCAGATGGGGGAGTCAGCACCAGGGATTCTGGCTGAAC
ATCTGTCCACAGCTCCCAGTGGTCCTTTAGTACCATCAGCAACAGCACCCAGCACTCGTACAATGCCTGCTGCAACTGGA
CTTAACACCCTTTGATCCAGAAGAACCACAGGGTAGTGCTAGCCTCCTTCCTGCTGCTACTGCTG

Alignment

ORF - retro_mluc_1560 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.21 %
• Parental protein coverage: 61.79 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NLENDEEGAQVSPEPDGGVNTRDSGRTSSVRSSQWSFSTISNSTQRSYNACCSWTQHPLIQKNRKVVLAS
          NLENDE.GA.VS.EPDGGV.TRDSG.TS.V.SSQWSFSTISNSTQ.SYNACC.WT.HPLIQKN..VVLAS
Retrocopy NLENDEYGARVSLEPDGGVSTRDSG*TS-VHSSQWSFSTISNSTQHSYNACCNWT*HPLIQKNHRVVLAS

Parental  FLLLLL
          FLLLLL
Retrocopy FLLLLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1560 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000016857	1 retrocopy	retro_ecab_382,
Myotis lucifugus	ENSMLUG00000005143	1 retrocopy	retro_mluc_1560 ,
Rattus norvegicus	ENSRNOG00000022153	1 retrocopy	retro_rnor_732,