RetrogeneDB ID: retro_mluc_1545

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429858:4544432..4545177(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022242
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NEURL
• Ensembl ID: ENSMLUG00000013182
• Aliases: None
• Description: None

Sequence

>retro_mluc_1545
CTCGTCTTCACCAGCCGGCCGGTGTGCGTGGCCGAGACCGTCTTCGTCGAGGACACGGGCTCCAGCGGCGCCCGGCCGGG
CGCGCTATCCTTTGGACGTCACCACGTGCGACTGCGGCACGCTGCGGCGTGCGGACCTGCCCTATCAGCATCGCGCTCTG
GTGCACCGCAAGCAGTTCTGGGAACGTGTGCCCGGGCCCCTGCAGAGTGGCGACATCCTGCGCCTGGTGGTCAACGCCGA
GGGCGAGCTGCACCTGAGCCACAGTGGCGCCGCCGCGGGCATGCAGCTGTGCGTGGACGCCTCGCATCCCCTGTGGATGC
TCTTCGGTCTGCATGGAGCCATCGCGCAGATCCGCCTCCTCGGCTCCACCATCCTGGCAGAGCGGGGCATCCCATCACTT
TCCTGCTCCCCCTCCTCCACACCAACCCCGCCCAGTGCCCTGGGCAGCCGCCTCTCTGACCCCTTGCTCAGCACCTGCAG
CTCGGGACCTCTGGGGAGCTCTGCTGGCGGGACAGCCCCCAACTCGCCGGTGAGCTTGCCCGAGTCGCCAGTGACCCCAG
GCACGGGCCAGTGGAGTGACGAGTGCACCATTTGCTATGAGCACGCAGTGGACACGGTCATCTACACATGTGGCCACATG
TGCCTCTGCTATGCCTGTGGCCTGCGCCTCAAGAAGGCTCTGCACGCCTGCTGCCCCATGTGCCGCCGCCCCGTCAAGGA
CATCATCAAGACGTACCGCAGCTCC

Alignment

ORF - retro_mluc_1545 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.44 %
• Parental protein coverage: 53.53 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVFTSRPVRVAETVFVKVTRSSGARPGALSFG-VTTCDPGTLRPADLPFSTEALVDRKEFWAVCRVPGPL
          LVFTSRPV.VAETVFV..T.SSGARPGALSFG.VTTCD.GTLR.ADLP....ALV.RK.FW...RVPGPL
Retrocopy LVFTSRPVCVAETVFVEDTGSSGARPGALSFG>VTTCDCGTLRRADLPYQHRALVHRKQFWE--RVPGPL

Parental  QSGDILGLVVNAEGELHLSHNGAAAGMQLCVDASQPLWMLFGLHGAIAQIRLLGSTILAERGIPSLPCSP
          QSGDIL.LVVNAEGELHLSH.GAAAGMQLCVDAS.PLWMLFGLHGAIAQIRLLGSTILAERGIPSL.CSP
Retrocopy QSGDILRLVVNAEGELHLSHSGAAAGMQLCVDASHPLWMLFGLHGAIAQIRLLGSTILAERGIPSLSCSP

Parental  ASTPTSPSALGSRLSDPLLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGTGQWSDECTICYEHAVDTVI
          .STPT.PSALGSRLSDPLLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGTGQWSDECTICYEHAVDTVI
Retrocopy SSTPTPPSALGSRLSDPLLSTCSSGPLGSSAGGTAPNSPVSLPESPVTPGTGQWSDECTICYEHAVDTVI

Parental  YTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYRSS
          YTCGHMCLCYACGLRLKKALHACCP.CRRP.KDIIKTYRSS
Retrocopy YTCGHMCLCYACGLRLKKALHACCPMCRRPVKDIIKTYRSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1545 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013182	1 retrocopy	retro_mluc_1545 ,