RetrogeneDB ID: retro_mluc_144

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02067252:4841..7604(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023692
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006232
• Aliases: None
• Description: None

Sequence

>retro_mluc_144
ATGTCTCTGCCAAGAAGACAAATAGCTATTATTAACCCTCCACCACCAGAATATATAAATACTAAGAAAAATGGGAGATT
GACAAATCAGCTGCAGTATCTACAAAAAGTTGTCTTGAAGGCTTTATGGAAGCATAGTTTTTCCTGGCCTTTTCAGCAGC
CTGTGGATGCCGTGAAACTAGATTTGCCCGATTATTACACCATTATCAAAAACCCAATGGATTTAAGTACAATTAAGAAG
CGCTTGGAAAATAAGTATTATGTGGAGGCTTCAGAATGCATAGAAGACTTCAGAACAATGTTCTCGAATTGTTATTTATA
CAACAAGCCTGGAGATGACGTTGTTCTTATGGTAAAAGCTCTAGAGAATTTATTTAAACAGAAATTATTACAGATGCCAA
GAGAAGAGCAAGTTGTGGGTGGTAAGGAAAGAAGAAAGAAAGGCACTCAACAGAATGTAGCAGTTTCTTCTGTTAAAGAA
AAACAGTCTCCTAAAGGATCAGAAAAAGTATTTAAGCTGCAAGTGAGTCCCTCGGTATTTCCTGAATCATCTACTTCTCC
TTTAAATATGGCACAAGGTGCTCCACCCAACTCTACCTCACAAACAGTGGCCCAGGTTACAAAGGGTGTAAAGAGGAAAA
CAGATACAACAACTCCTACAACTTCAGTCATTAAAGCAAGTGGTGAACCTTCCCCAGCACTTCCAGAAAAAAAAATAGCC
AAAATGCCACCCGTAAAAGAAAGTGGGGGGAAGAATGTTTTGCTGAATTCTCAGCAACAATATAAAGTTAAAGTAACTGA
ACCGTTAAGGCACTGTAGTGAGATTCTGAAAGAACTGTTTGCAAAGAAGCACTTTTCATATGCATGGCCCTTTTATAATC
CTGTTGATGTTGCATTGGGACTCCATAACTACTATGACATTGTGGAAAATCCAATGGATCTTGGAACTATCAAGAGAAAA
ATGGACAACCAAGAATATAAGGATGCATATGAATTTGCTGCAGATGTTAGATTAATGTTCCTGAATTGCTACAGATGCAG
TCCTCCAGATCATGAAGTAGTGACAATGGCAAGAATGCTCCAGGATGTGTTTGAAATGCATTTTGCAAAGATCCCAGATG
AACCTGTTGAGAGTAAGCCTGTATATAATATCAAAACAGATACCACAAAGTCCCCTGGTAGAGAAAGCAGTGCTGAAACT
TCCTCTGAAGATAACTCTTCTGGTGATTCTGAAGACGACCAAGATCACTCTATTGCAAAGCTTCAGAAGCAGTTTAAAGC
TATTCATCAGCAACTGGAGGTTCTATCCCAAGTACCTTTCCATACGCTAAAGGAAAAAAATGACAAATCTAAACGGGAAA
AGAAAAAAGGAAAGGTTGATAACACAGATGAAAATCCAAGAAAGAAGTTTAAGCAAATGAAATTAAAGGAGAAATCTAAG
AGCAATGATCCAAAGAAGAGGGAACAATCAGTGTTGGCTCTGAAGTCTGAGGATGAAGATAATGCTGAACCTATGAGCCA
TGATGAGAAAAGGCGGTTAAGTTTGAATATAAGCAAACTCCCTGTAGATAAACTTGGAAAAGTCCTTCATATAATACATT
CAAGAGAAGCTTCACTGAGAAATTCCAGCCATGAGGAGATAGAGGTAGACTTGAAAACACTGAAAACTACAACACTGAGA
GAGCTAGAAAAATATGTTGCTGCATGTCTAAGAAAAAGACCACTAAAACCTAGTAGTAAGAAAATAATGAAGTCAAATGA
AGAACTTCATGCACAGAAAAAACAGGAGTTGGAAAAGCGATTACTAGATGTCAATAATCAGTTAAATTCCAGAAAATGCC
AAACAAAATCTGAGAAAACGCCATCATCCACAGCTGTTATTGGCATTGATTCCCGATTGAGTGACAGCAGCAGCAGTTCG
TCAGAGTCTGAAAGTAGTAGCAGTGATTCAGTTACTTCAGACAGCAGTGATTCCGAATCAGAAATGTTACCTAAATTTAC
TGAAGTGAAACAGAATGGATCTCCTTCTAAAGAGAAAGTAAAGATACAATCTACTATGCGAGATACAACCTCTAGCACTA
TTGCCCTTTTTCATCAGACTGCACATTCAAGTGGAACCGCACCAGATCACCACCAGTTAGCAATTAATCATCAAGAACTA
GAACAGAAACCGAGTGTGAAAAACATTTCACCTTTACAAATCCTGCCTTTCTCAGGTGGTTCTGAAAATCACTTGAATGG
CCTAACTGTGATGCATCAGTCCGGGGATGACACAATGGTGGTCGAGTCTGAATGTCAAGTTTCTGTGCAGAAGGATATAA
AAATCAAGAATGCTGACTCTTGGAAAAGTGTAGGCAAACCAGTTAAAACTTCAGGTGTAGGGAAATCCTCCGATGAGCTC
TTCAACCAGTTTAGAAAAGCAGCAATAGAGAAGGAAGCAAAAGCTCGAACACAGGAACTGATACGGAAACATCTGGAACA
GAATACAAAGGAACCCAAAGTATTTCAAGAAAATCAAAGGCACCCTGGTTCCACTCTAGAATCTTTTTCAAATAAGATGC
CAAACAAGTGCCTTGGAGACAAGCAAAAAGAACATCAGCAGTCATTGGAAGCTCAAGAGGACAGTAGACTTGGGCTTCTC
AAAGACCGTAATTTAGCAAGGGAGAGAGAGCAAGAGCGGAGGAGGCGAGAAGCAATGGCTGGTACCATTGATATGACTCT
TCAACGTGACATTATGACAATGTTTGAAAACAGCTTTGATTAA

Alignment

ORF - retro_mluc_144 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.94 %
• Parental protein coverage: 72.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSLPSRQIAIINPPPPEYINTKKNGRLTNQLQYLQKVVLKALWKHSFSWPFLQPVDAVKLQLPDYYTIIK
          MSLP.RQIAIINPPPPEYINTKKNGRLTNQLQYLQKVVLKALWKHSFSWPF.QPVDAVKL.LPDYYTIIK
Retrocopy MSLPRRQIAIINPPPPEYINTKKNGRLTNQLQYLQKVVLKALWKHSFSWPFQQPVDAVKLDLPDYYTIIK

Parental  NPMDLSTIKKRLENKYYVEASECIEDFRTMFSNCYLYNKPGDDIVLMAQALENLFKQKLLQMPKEEQVVG
          NPMDLSTIKKRLENKYYVEASECIEDFRTMFSNCYLYNKPGDD.VLM..ALENLFKQKLLQMP.EEQVVG
Retrocopy NPMDLSTIKKRLENKYYVEASECIEDFRTMFSNCYLYNKPGDDVVLMVKALENLFKQKLLQMPREEQVVG

Parental  GKERIKKGTQQNVAVSSVKEKQSPKGSEKVFKPQVSPSVFPESSTSPLNMAQGAPPNSTSQTVAQVTKGV
          GKER.KKGTQQNVAVSSVKEKQSPKGSEKVFK.QVSPSVFPESSTSPLNMAQGAPPNSTSQTVAQVTKGV
Retrocopy GKERRKKGTQQNVAVSSVKEKQSPKGSEKVFKLQVSPSVFPESSTSPLNMAQGAPPNSTSQTVAQVTKGV

Parental  KRKADTTTPTTSVVKASGGPSPALPEKKTAKMPPVKESGGKNVLLNSQQQYKVKVTEPLRHCSEILKELF
          KRK.DTTTPTTSV.KASG.PSPALPEKK.AKMPPVKESGGKNVLLNSQQQYKVKVTEPLRHCSEILKELF
Retrocopy KRKTDTTTPTTSVIKASGEPSPALPEKKIAKMPPVKESGGKNVLLNSQQQYKVKVTEPLRHCSEILKELF

Parental  AKKHFSYAWPFYNPVDVNALGLHNYYDIVKNPMDLGTIKRKMDNQEYKDAYEFAADVRLMFMNCYRYNPP
          AKKHFSYAWPFYNPVDV.ALGLHNYYDIV.NPMDLGTIKRKMDNQEYKDAYEFAADVRLMF.NCYR..PP
Retrocopy AKKHFSYAWPFYNPVDV-ALGLHNYYDIVENPMDLGTIKRKMDNQEYKDAYEFAADVRLMFLNCYRCSPP

Parental  DHEVVTMARMLQDVFEMHFAKIPDEPVESKPVYNIKTDTTKSLGRESSTETSSEDNSSDDSEDDEVQCIA
          DHEVVTMARMLQDVFEMHFAKIPDEPVESKPVYNIKTDTTKS.GRESS.ETSSEDNSS.DSEDD....IA
Retrocopy DHEVVTMARMLQDVFEMHFAKIPDEPVESKPVYNIKTDTTKSPGRESSAETSSEDNSSGDSEDDQDHSIA

Parental  KLKKQIKAVHDQLQVLSQVPHHKLKKK-DKSKREKKKGKVNNTDENPRKKFKQMKIKEKSKSNEPKKRQQ
          KL.KQ.KA.H.QL.VLSQVP.H.LK.K.DKSKREKKKGKV.NTDENPRKKFKQMK.KEKSKSN.PKKR.Q
Retrocopy KLQKQFKAIHQQLEVLSQVPFHTLKEKNDKSKREKKKGKVDNTDENPRKKFKQMKLKEKSKSNDPKKREQ

Parental  QVLALESEDEDNAKPMSHDEKRRLSLDINKLPGDKLGKVLHIIHSREPSLRNSNHEDIEIDFETLKTTTL
          .VLAL.SEDEDNA.PMSHDEKRRLSL.I.KLP.DKLGKVLHIIHSRE.SLRNS.HE.IE.D..TLKTTTL
Retrocopy SVLALKSEDEDNAEPMSHDEKRRLSLNISKLPVDKLGKVLHIIHSREASLRNSSHEEIEVDLKTLKTTTL

Parental  RELEKYVAACLRKRPLKPHGKKIMKSNEELHAQKKQQLEKRLLDVNNQLNSRKCQTKSEKTPSSTAVVGI
          RELEKYVAACLRKRPLKP..KKIMKSNEELHAQKKQ.LEKRLLDVNNQLNSRKCQTKSEKTPSSTAV.GI
Retrocopy RELEKYVAACLRKRPLKPSSKKIMKSNEELHAQKKQELEKRLLDVNNQLNSRKCQTKSEKTPSSTAVIGI

Parental  GSRLSDSSSSSSESESSSSDSVTSDSSDSESEMLPKFTEVKQNGSPSKEKVK
          .SRLSDSSSSSSESESSSSDSVTSDSSDSESEMLPKFTEVKQNGSPSKEKVK
Retrocopy DSRLSDSSSSSSESESSSSDSVTSDSSDSESEMLPKFTEVKQNGSPSKEKVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_144 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006232	1 retrocopy	retro_mluc_144 ,