RetrogeneDB ID: retro_mluc_1394

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429830:4985298..4986050(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023342
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: IRF6
• Ensembl ID: ENSMLUG00000004509
• Aliases: None
• Description: None

Sequence

>retro_mluc_1394
GAGCTGTGGATCAGCTCTCTTCCAATGACTGACCTGGACATCAAGTTTCAGTACCGTGGGAAGGAGTATGTGTAGACCTT
GACCGTGAGCAACCCCCAGGGCTCTTCTATGGGGATCTGGGTCCCATGCCTGACCAGGAGGAGCTCTTTGGTCCTGTTAG
TCTGGAGCGGGTCAAGTTCCCAGATCTGGAGCACATCACCAATGAGAAGCAGAAGCTGTTCACCAGCAAGCTGCTAGACG
TCATGGACAGAGGACTGATCCTGGAGGTCAGCGGTCACGCCATTTATGCCATCAGGCTGTGCCAGTGCAAGGTGTACTGG
TCAGGGCCACGTGACACATCACTTGTTGCTCCCAACCTGATTGAGATGCAAAAGAAGGTCAAACTCTTTTGTCTGGAAAC
ATTCCTTAGTGATCTCATTGCCCACCAGAAGGGACAGATAGAGAAGCAGCCGCCATTTGAGATCTACTTATGCTTTGGAG
AAGAATGGCCAGACGGGAAACCCCCGGAAAGGAAACTCATCTTGGTTCAGGTTATTCCGGTGGTGGCTCGAATGATCTAC
GAGATGTTTTCTGGTGATTTCACACGATCCTTTGACAGTGGCAGTGTCCGCCTGCAGATCTCGACTCCAGACAGCAAAGA
TAACATCGTTGCTCAGCTGAAGCAGCTGTATCACATCCTCCAAACCCAGGAAAGCTGGCAGCCCATACAGTCTACCCCCA
ACATGCAGCTGCCCCTGGCCCTGCCGGCTCAG

Alignment

ORF - retro_mluc_1394 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.91 %
• Parental protein coverage: 56.22 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QLWISSLPMTDLDIKFQYRGKEYVQTLTVSN-PQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHIT
          .LWISSLPMTDLDIKFQYRGKEYV.TLTVSN.P.G..LFYGDLGPMPDQEELFGPVSLE.VKFP..EHIT
Retrocopy ELWISSLPMTDLDIKFQYRGKEYV*TLTVSN<PPG--LFYGDLGPMPDQEELFGPVSLERVKFPDLEHIT

Parental  NEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPCAPSLVAPNLIERQKKVKLFCLETFLS
          NEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGP...SLVAPNLIE.QKKVKLFCLETFLS
Retrocopy NEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCKVYWSGPRDTSLVAPNLIEMQKKVKLFCLETFLS

Parental  ELIAHQKGQIEKQPPFEIYLCFGEEWPDGKPPERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQI
          .LIAHQKGQIEKQPPFEIYLCFGEEWPDGKPPERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQI
Retrocopy DLIAHQKGQIEKQPPFEIYLCFGEEWPDGKPPERKLILVQVIPVVARMIYEMFSGDFTRSFDSGSVRLQI

Parental  STPDIKDNIVAQLKQLYRILQTQESWQPMQSTPNMQLPPALPAQ
          STPD.KDNIVAQLKQLY.ILQTQESWQP.QSTPNMQLP.ALPAQ
Retrocopy STPDSKDNIVAQLKQLYHILQTQESWQPIQSTPNMQLPLALPAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1394 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004509	2 retrocopies	retro_mluc_1394 , retro_mluc_840,