RetrogeneDB ID: retro_mluc_1355

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:513407..514624(+)
• Located in intron of: ENSMLUG00000026986

Retrocopy information

• Ensembl ID: ENSMLUG00000024515
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016891
• Aliases: None
• Description: None

Sequence

>retro_mluc_1355
GGGAAAGTAGAACTGCAAGGAAAACGCCTAGAGATTGAACACTCCGTCCCCAAAAAACAAAGGCATCGGAAAATTCAGAT
CCAAAATATTCCACCCCAGCTACGATGGGAAGTCCTGGACAGCCTGCTTGCTCAGTGTGGAACAGCAGAGAACTGTGAAC
AAGTGAACACGGAAAGTGAGACGGCTGTGGTGAATGTCACCTATTCCAACTGGAAACAGACCAGGCAAGCCATCATGAAG
CTGAATGGCCACCAGCTGGAGAACCATGCCTTGAAGGTCTCCTATATTCCCCTCGAGCAGACAGCACAGGGTCCTGAGAA
TGGGCGCCAAAGGGGCTTTGGCTCTCAGGGTCAGCCTCGACAGGGCTCGCCTGTGGCAGCCGGGGCCCCTGCCAAGAAGC
AGCAAGTGGACATCCCCCTGTGGCTTCTGGTGCCCACCCAGTATGTGGGCACCATCATTGGCAAGGAGGGCGCCACCATC
CAAAATATCACAAAACAGACCCAGTCCAAGACCGACATGCACAGGAAGGAGAATGCAGGTGCTGCCGAGAAGGCCATCAG
TGTCCACTCGACCCCCGAGGGCTGCTCCTCCGCCTGTAAGATGATCTTGGAGATCATGCATAAGGAGGACAAGGACACCA
AAACGGCTGACGAGGTTCCCCTGAAGATCCTGGCCCATAATAACTTCATGGGGCGTCTCATTGGCAAGGAGGGGCGCAAC
CTGAAGAAGGTGGAGCAGGACACGGAGACGAAAATCACCATCTCCTCGCTGCAGGACCTCACCCTCTATAACCCCGAAAG
GACCATCACCATGAAGAGGGCCATCGAGAACTGCTGCAGGGCCGAGCAGGAGATCATGAAGAAAGTTCCGGAGGCCTATG
AGAATGACGTGGCTGTCATGAGTCTGCAGTCTCATCTCATCCCCGGCCTGAACTTGGCTGCCGGGGGTCTTTCCCCAGCC
TCGTCCAGTGCAGTCCTGCCGCCTCCCAGCAGTGTCACGGGAGCTGCTCCCTATAGCACCTTTATGGCTCTGGAGCAGGA
GATGGTGCAGGTCTTCATCCCTGCCCAGCGGGGGGCGCCATCATCGGCAAGAAGGGGCAGCACATCAAACAGCTCTCCCG
TTTCGCCAGCGCCTCCATCAAGATTGCTCCTCCGGAAACTCCTGACTCCAAAGTTCGTATGGTCATCATCACTGGACCCC
CAGAGGCCCAATTCAAG

Alignment

ORF - retro_mluc_1355 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.2 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GKVELQGKRLEIEHSVPKKQRSCKTRARSIQPRARLLVLDSLLAQYGTVENCEQVNTESETAVVNVTYSN
          GKVELQGKRLEIEHSVPKKQR..K.....I.P..R..VLDSLLAQ.GT.ENCEQVNTESETAVVNVTYSN
Retrocopy GKVELQGKRLEIEHSVPKKQRHRKIQIQNIPPQLRWEVLDSLLAQCGTAENCEQVNTESETAVVNVTYSN

Parental  REQTRQAIMKLNGHQLENHALKVSYIPDEQTAQGPENGRRGGFGSRGQPRQGSPVAAGAPAKQQQVDIPL
          ..QTRQAIMKLNGHQLENHALKVSYIP.EQTAQGPENGR..GFGS.GQPRQGSPVAAGAPAK.QQVDIPL
Retrocopy WKQTRQAIMKLNGHQLENHALKVSYIPLEQTAQGPENGRQRGFGSQGQPRQGSPVAAGAPAKKQQVDIPL

Parental  RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEGCSSACKMILEIMHKEA
          .LLVPTQYVG.IIGKEGATI.NITKQTQSK.D.HRKENAGAAEKAISVHSTPEGCSSACKMILEIMHKE.
Retrocopy WLLVPTQYVGTIIGKEGATIQNITKQTQSKTDMHRKENAGAAEKAISVHSTPEGCSSACKMILEIMHKED

Parental  KDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCR
          KDTKTADEVPLKILAHNNF.GRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTIT.K.AIENCCR
Retrocopy KDTKTADEVPLKILAHNNFMGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITMKRAIENCCR

Parental  AEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSSAV-PPPSSVTGAAPYSSFMQAPEQEMV
          AEQEIMKKV.EAYENDVA.MSLQSHLIPGLNLAA.GL.PASSSAV.PPPSSVTGAAPYS.FM.A.EQEMV
Retrocopy AEQEIMKKVPEAYENDVAVMSLQSHLIPGLNLAAGGLSPASSSAVLPPPSSVTGAAPYSTFM-ALEQEMV

Parental  QVFIPAQ-AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFK
          QVFIPAQ.A.GAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFK
Retrocopy QVFIPAQ<AGGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1355 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000008872	1 retrocopy	retro_ggor_2495,
Myotis lucifugus	ENSMLUG00000002631	1 retrocopy	retro_mluc_599,
Myotis lucifugus	ENSMLUG00000016891	1 retrocopy	retro_mluc_1355 ,