RetrogeneDB ID: retro_mluc_1220

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429807:6583672..6584389(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022520
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000548
• Aliases: None
• Description: None

Sequence

>retro_mluc_1220
ATTAACCTGTTGAGGGGAGCAGAGCCCGCACGAGGCCCGTGGCACCCAAGGAGATGGAGCGGGTGGTGAGCATCATACAG
GTAAGTTCAGCGCCATCCAGATGCAGCTCCAGGCAGAGCACCTGCGAGGCCGTCATGATCCTTCGCTCCCAGTTCCTGGA
TGCCAGACAGCAACGCGGGAACTTCAGGAAACAGGCCACCGAGGTCCTAAATGAGTATTTCTATTCCCACCTGAGTAACC
TGTATCCCAGTGAGGAGGCTAAGGAGGAGCTCGCCAAGAAGTGTGGTATCACCGTCTCTCAGATCTCCAACTGGTTTGGC
AACAAGCGGATTCACTATAAGAATATTGGAAAGTTTCAAGAGGAGGCAGACATCTATGTCATCAAGACTGCCTTGTCTGT
CAGCCAGGGGGGCCACAGCCACACCAGCTCCCCAACACCCCCTTCCTCCACAGGCTCTGGCAGCTCTTTCAATCTTTCAG
GATCCGGAGACATGTTTCTGGGGATGCCCTGGCTCAATGGAGATTCCTACCCTGCTTCCCAGGTGGAATCACTCCAATAC
TCGATGGGCCCAGGGACCATGGAGATAACCTCGGGGGAGGCCAGATGGACAGCCCTCGGGAAATGAGGGAAAATGGCACT
GGCAGGAGGCTGTGACCCCGTCCTCAGTGACGTCCCCAACAGAAGGACCGGGGAGCGCTCATTCTGACACTTCCCAC

Alignment

ORF - retro_mluc_1220 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.15 %
• Parental protein coverage: 55.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  MNLLR-EQS-RTRPVAPKEMERMVSIIH-RKFSAIQMQL-KQSTCEAVMILRSRFLDARRKRRNFSKQAT
          .NLLR.EQS.RTRPVAPKEMER.VSII...KFSAIQMQL..QSTCEAVMILRS.FLDAR..R.NF.KQAT
Retrocopy INLLR>EQS>RTRPVAPKEMERVVSIIQ<GKFSAIQMQL>RQSTCEAVMILRSQFLDARQQRGNFRKQAT

Parental  EVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQ
          EVLNEYFYSHLSN.YPSEEAKEELAKKCGITVSQ.SNWFGNKRI.Y.KNIGKFQEEA.IY..KTA.SV.Q
Retrocopy EVLNEYFYSHLSNLYPSEEAKEELAKKCGITVSQISNWFGNKRIHY-KNIGKFQEEADIYVIKTALSVSQ

Parental  GGHSRTSSPTPPSSAGSGGSFNLSGSGDMFLGMPGLNGDSYPASQVESLRHSMGPG-GYGDSLGGGQMYS
          GGHS.TSSPTPPSS.GSG.SFNLSGSGDMFLGMP.LNGDSYPASQVESL..SMGPG...GD.LGGGQM.S
Retrocopy GGHSHTSSPTPPSSTGSGSSFNLSGSGDMFLGMPWLNGDSYPASQVESLQYSMGPG<DHGDNLGGGQMDS

Parental  PREMRANG-GWQEAVTPSSVTSPTEGPGSVHSDTSN
          PREMR.NG..WQEAVTPSSVTSPTEGPGS.HSDTS.
Retrocopy PREMRENG<HWQEAVTPSSVTSPTEGPGSAHSDTSH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1220 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000548	3 retrocopies	retro_mluc_1220 , retro_mluc_1790, retro_mluc_981,
Otolemur garnettii	ENSOGAG00000016303	1 retrocopy	retro_ogar_2252,
Tursiops truncatus	ENSTTRG00000013787	1 retrocopy	retro_ttru_1118,