RetrogeneDB - Retrocopy retro_mluc

                        
>retro_mluc_1210
ATGGCGACTTCAGGCGCTCTGTTTCCAAGCCTGGTGCCAGGCTCCTGTGGGTCCTCCAACAAGTATTTGGTGGAGTTTCG

GGCAGGAAAAATGTCATTAAAAGGAACAACTGTCACCCCAGACAAAAGAAAAGGGCTCGTGTACATTCAGCAGACGATGA

CTCCCTCATTCACTTCTGCTGGAAAGACAGGACGTCTGGGAACGTGGAAGACGATTTGATTATCTGCCCTGATGACTGTG

AGTTCAAGCGCTTGCCGCAGTGCCCCAGCGGGAGGGTCTACGTGCTCAAGTTCAAGGCAGAGTCCAAACGGCTCTTCTTC

TGGATGCAGGAGCCTAAGGCGGACCAGGACGAGGAGCATTGCCAGAAAGTCAACGAGTATCTGAACAACCCACAGATGCC

CGGAGCACTGGGGTCGAGCGGGAGTGGAGGCCATGAGCTGTCTGCACTGGGCGGCGAGGGCGGCCTGCAGAGCCTGGTGG

GGAACATGAACCATAGCCAGCTCATGCAGCTCATCAGACCCGCCGGCCTCGGAGGACTGGGTGGGCTGGGGGCCCTGATT

GGGCCAGGCCTGGCCAGCTTACTGGGGAGTGGAGGGCCTCTGGCGAGCAGCTCCTCATCCAGCTCCCAGAGCCAGTCAGC

AGCGTTGACCCCGTCCTCCACCGCCTCTTCTGCCCGAGCCACCCCAGCCCCTTCTGCTCCAGCAGCTGCCTCAGTGACCA

GCCCAAGTCCCACGCCCAATCCAGGTAATGGAACCAGCACAGCAGCCAGCCCAACCCAGCCCATCCAGCTGACCGACCTC

CAGAGCATTCTATCCACTATGAACGTGCCGGCCGGGCCAGGAGGCAGCCAGCAAGTTGACCTGGCCAGTGTCTTGACACC

CGAGATCATGGCACCTATCCTCGCCAACGCGGACGTCCAGGAGCGCCTGCTACCCTACCTGCCCTCTGGGGAGTCGCTGC

CACAGACCGCAGAGGAGATCCAGAACACACTGACCGCCCCCCAGTTCCAGCAGGCCCTGGGCATGTTCAGTGCGGCCTTG

GCCTCAGGGCAGCTGGGCCCCCTCATGTGCCAGTTTGGCCTGCCTGCAAAGGCCATCAACAAGGGTGATGTGGATGCTTT

TGCTAAAGCGATGCAGAACAGTGCCAGATCGGAGCAGAAGGAGGGCGATGGGAAGGACAAGAAGGAGGAAGAGGAGGACA

TGAGCTTAGAT

ORF - retro_mluc_1210 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	93.38 %
Parental protein coverage:	100.0 %
Number of stop codons detected:	0
Number of frameshifts detected:	1

Retrocopy - Parental Gene Alignment:

                                ParentalMATSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT-DDSLIHFCWKDRTSGNV
MATSGALFPSLVPGS.GSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT.DDSLIHFCWKDRTSGNV
RetrocopyMATSGALFPSLVPGSCGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT<DDSLIHFCWKDRTSGNV
ParentalEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGA
EDDLII.PDDCEFKR.PQCPSGRVYVLKFKA.SKRLFFWMQEPK.DQDEEHC.KVNEYLNNP.MPGALG.
RetrocopyEDDLIICPDDCEFKRLPQCPSGRVYVLKFKAESKRLFFWMQEPKADQDEEHCQKVNEYLNNPQMPGALGS
ParentalSGSGGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSGGPPASSSSSSS
SGSGGHELSALGGEGGLQSL.GNM.HSQLMQLI.PAGLGGLGGLGAL.GPGLASLLGSGGP.ASSSSSSS
RetrocopySGSGGHELSALGGEGGLQSLVGNMNHSQLMQLIRPAGLGGLGGLGALIGPGLASLLGSGGPLASSSSSSS
ParentalRSQSAAVTPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQLSDLQNILATMNVPAG
.SQSAA.TPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQL.DLQ.IL.TMNVPAG
RetrocopyQSQSAALTPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQLTDLQSILSTMNVPAG
ParentalPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALAS
PGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLT.PQFQQALGMFSAALAS
RetrocopyPGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTAPQFQQALGMFSAALAS
ParentalGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSARSEQKEGDGKDKKDEEEDMSLD
GQLGPLMCQFGLPA.A....NKGDV.AFAKAMQNSARSEQKEGDGKDKK.EEEDMSLD
RetrocopyGQLGPLMCQFGLPAKAI---NKGDVDAFAKAMQNSARSEQKEGDGKDKKEEEEDMSLD

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1210 was not experimentally validated.

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009124	1 retrocopy	retro_meug_1177,
Myotis lucifugus	ENSMLUG00000000322	1 retrocopy	retro_mluc_1210 ,

	RetrogeneDB ID:	retro_mluc_1210
Retrocopy location	Organism:	*Microbat (Myotis lucifugus)*
	Coordinates:	GL429807:5230961..5232172(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	ENSMLUG00000023164
	Aliases:	None
	Status:	KNOWN_PSEUDOGENE
Parental gene information	Parental gene summary:
	Parental gene symbol:	ADRM1
	Ensembl ID:	ENSMLUG00000000322
	Aliases:	None
	Description:	None

Parental	MATSGALFPSLVPGSRGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT-DDSLIHFCWKDRTSGNV
	MATSGALFPSLVPGS.GSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT.DDSLIHFCWKDRTSGNV
Retrocopy	MATSGALFPSLVPGSCGSSNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQT<DDSLIHFCWKDRTSGNV

Parental	EDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGA
	EDDLII.PDDCEFKR.PQCPSGRVYVLKFKA.SKRLFFWMQEPK.DQDEEHC.KVNEYLNNP.MPGALG.
Retrocopy	EDDLIICPDDCEFKRLPQCPSGRVYVLKFKAESKRLFFWMQEPKADQDEEHCQKVNEYLNNPQMPGALGS

Parental	SGSGGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSGGPPASSSSSSS
	SGSGGHELSALGGEGGLQSL.GNM.HSQLMQLI.PAGLGGLGGLGAL.GPGLASLLGSGGP.ASSSSSSS
Retrocopy	SGSGGHELSALGGEGGLQSLVGNMNHSQLMQLIRPAGLGGLGGLGALIGPGLASLLGSGGPLASSSSSSS

Parental	RSQSAAVTPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQLSDLQNILATMNVPAG
	.SQSAA.TPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQL.DLQ.IL.TMNVPAG
Retrocopy	QSQSAALTPSSTASSARATPAPSAPAAASVTSPSPTPNPGNGTSTAASPTQPIQLTDLQSILSTMNVPAG

Parental	PGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTSPQFQQALGMFSAALAS
	PGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLT.PQFQQALGMFSAALAS
Retrocopy	PGGSQQVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTAEEIQNTLTAPQFQQALGMFSAALAS

Parental	GQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNSARSEQKEGDGKDKKDEEEDMSLD
	GQLGPLMCQFGLPA.A....NKGDV.AFAKAMQNSARSEQKEGDGKDKK.EEEDMSLD
Retrocopy	GQLGPLMCQFGLPAKAI---NKGDVDAFAKAMQNSARSEQKEGDGKDKKEEEEDMSLD

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_mluc_1210