RetrogeneDB ID: retro_mluc_1176

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429803:8063028..8063669(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF394
• Ensembl ID: ENSMLUG00000017348
• Aliases: None
• Description: None

Sequence

>retro_mluc_1176
GAGCAGTTCCTGACCATCCTGCCCCCAGAGCTGCAAGGACTGGGTGCAGTAGCACTACCCCAAGAGCGAGAACCAGGCTG
TGGGCATGGCAGGGCTCCTGAGAGAGCGCCTGGTGGAACTGCACCCAGAGCCTGGTGAAGGTCAAGGATGTACCTGTAAC
CTGGGAGGAGTGGGAGCATCTGGACCCAGTTCAGAGAAACTTCTGCAGGGATAGTGCACTGAAGGGTTATGGGAACACAG
CCCTACCAAGTTTGGGAACCAGAACAGAGAACAAAGAGTTGATTCCAAAGCAAGAAATACTAGAAGTAGAGCCACAGATG
CAGCTACAAGAAGGGTGCCAGGGGAAGGCTCCCCTGTTGTCCAAATGTGGTGATGCAGGAGGAGACGGTAGGAAAGCACT
CAGGAAACCCCTTATTCCTGAAACTTGAAAATTCTCCTGAGGAACAAGGACTCACCAGCATCTCAGATCTCAAAAATGGT
CCCACAGAAGAGGTAGACTCCAAAAATAATGAAATTGGAAATAGTGCCAGAAGTTCAAACTTAATTTTTGTCAGCATGGC
CTGACAGCAGAGAGGTCTGTTAATGGTGCTGAATGTGGCAACAAGTGCAAACAGAGTGTAGATATGGTGAAACATCAAGT
G

Alignment

ORF - retro_mluc_1176 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.91 %
• Parental protein coverage: 61.78 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  EQFLTALPPEL-RDRVRRRDPASADQAAATVRALR-RTRGGTS-LPGLVKVKDVPVTWEEWEHLDPVQRD
          EQFLT.LPPEL..D.V....P.S..QA......LR.R..GGT.....LVKVKDVPVTWEEWEHLDPVQR.
Retrocopy EQFLTILPPEL>KDWVQ*HYPKSENQAVGMAGLLR<RAPGGTA<TQSLVKVKDVPVTWEEWEHLDPVQRN

Parental  IYRESTLKDYGNTVLPSLETRTENKELIPKQESLEVEPQMQLQERSQGNAPLLSKCGDTHEEMVEKHSRN
          ..R.S.LK.YGNT.LPSL.TRTENKELIPKQE.LEVEPQMQLQE..QG.APLLSKCGD.......K..R.
Retrocopy FCRDSALKGYGNTALPSLGTRTENKELIPKQEILEVEPQMQLQEGCQGKAPLLSKCGDAGGD-GRKALRK

Parental  P-LFLKIENSPEEQRLTSISDLKNVPTEEGDSKNNEIGNSARSSNLV-LCQPGLTVERSVNGAEHGNRCK
          P.LFLK.ENSPEEQ.LTSISDLKN.PTEE.DSKNNEIGNSARSSNL...CQ.GLT.ERSVNGAE.GN.CK
Retrocopy P>LFLKLENSPEEQGLTSISDLKNGPTEEVDSKNNEIGNSARSSNLI<FCQHGLTAERSVNGAECGNKCK

Parental  QSLNIMKLQV
          QS....K.QV
Retrocopy QSVDMVKHQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1176 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017348	1 retrocopy	retro_mluc_1176 ,