RetrogeneDB ID: retro_mluc_1157

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429800:1756047..1756683(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026626
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DGAT2
• Ensembl ID: ENSMLUG00000017447
• Aliases: None
• Description: None

Sequence

>retro_mluc_1157
CGGTCACAGTGGGTCCGAAATTGGGCTGTGTGGCGCTGCTTTCGAGACTACTTTCCCATCCGGCTGGTGAAGACTCACAA
CCTGCTGACCACCAGGAACTACATCTTGGGATACCACCCCCATGGCATCATGGCTGTGGGTGCCTTCTGCAACTTCAGCA
CAGAGGCCACGGAAGTGAGCAAGAAGTTTCCCGGCATAAGGCCCCACCTGGCCACGCTGGCCGGCAACTTTCGGGTGCCA
GTGCTGAGGGAGTACCTGATCTCCGGAGGCTTCTGCCCGGTGAACCGGGGCACCATAGACTACTTGCTTTCAAAGAACGG
GAGTGGCAATGCCATCATCATCGCACTGGGGGGCGCAGCCGAGTCCCTGAGCTCCGTGCCCGGCAAGAATGTGGTCATCC
TGCACAACCACAAGGGCTTTGTGAAACTGGCCCTGCGACATGGAGCCGACCTTGTTCCCACCTACTCGTTCGGAGAGAAT
GAGGTCTACAAGCAAGTGATCTTTGAAGTGGGCTCCTGGGGCCGATGGGTCCAGAGCAAGTTCCAGAAGCACATTGGCTT
CGCCCCGTGCATCTTCCATGGCCGAGGCCTCTTCTCTGACACCTGGAGGCTGCTGCCTTACTCCAAGCCCATCACC

Alignment

ORF - retro_mluc_1157 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.2 %
• Parental protein coverage: 55.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSQWVRNWAVWRYFRDYFPIQLVKTHNLLTTRNYIFGYHPHGIMGLGAFCNFSTEATEVSKKFPGIRPYL
          RSQWVRNWAVWR.FRDYFPI.LVKTHNLLTTRNYI.GYHPHGIM..GAFCNFSTEATEVSKKFPGIRP.L
Retrocopy RSQWVRNWAVWRCFRDYFPIRLVKTHNLLTTRNYILGYHPHGIMAVGAFCNFSTEATEVSKKFPGIRPHL

Parental  ATLAGNFRMPVLREYLMSGGICPVNRDTIDYLLSKNGSGNAIIIVVGGAAESLSSMPGKNAVTLRNRKGF
          ATLAGNFR.PVLREYL.SGG.CPVNR.TIDYLLSKNGSGNAIII..GGAAESLSS.PGKN.V.L.N.KGF
Retrocopy ATLAGNFRVPVLREYLISGGFCPVNRGTIDYLLSKNGSGNAIIIALGGAAESLSSVPGKNVVILHNHKGF

Parental  VKLALRHGADLVPTYSFGENEVYKQVIFEEGSWGRWVQKKFQKYIGFAPCIFHGRGLFSSDTWGLVPYSK
          VKLALRHGADLVPTYSFGENEVYKQVIFE.GSWGRWVQ.KFQK.IGFAPCIFHGRGLF.SDTW.L.PYSK
Retrocopy VKLALRHGADLVPTYSFGENEVYKQVIFEVGSWGRWVQSKFQKHIGFAPCIFHGRGLF-SDTWRLLPYSK

Parental  PIT
          PIT
Retrocopy PIT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1157 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000024847	1 retrocopy	retro_ecab_320,
Myotis lucifugus	ENSMLUG00000017447	1 retrocopy	retro_mluc_1157 ,