RetrogeneDB ID: retro_mluc_1057

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429791:5253805..5254483(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000028725
• Aliases: None
• Description: None

Sequence

>retro_mluc_1057
GCGGCAGCGGGCTGGCGGCGGCCACAGCTGGTGAGCATGCAGGAGCACATGGCCATCGATGTGAACCCGGGACCCATCCA
GCCCATCCCCCTCATTTCTGACTACTTCCCGCATTTCTACCTCTTTGCTGAGCCTGCCCGGGGTGCCCCAGGCCCACACC
CTGCAGTGTCTCCCGCCAGCTCTGCACCCCAGCCGCAGCCAGACCCAGAGCCAGAGGGAGACTCAGAGGACAGCGCTACC
CTGGGCACCCTCGAGATCACACTTCTTTTTGATGCGGACAACAGTGCCCTGCACTTCACGGCTCACTGTGCCAAGGGCCT
CAAGCCACCAGCCTCAGGCTCCCTGGACACCTATGTCAGGGCCAATCTGCTGCCAGGGGCCAGCAAGGCCAGCCAGCTGA
GGACACGCACAGTTCGGGGCACAAGAGGGCCTGTCTGGGAAGAGACGCTCACTTACCACGGCTTCACCCACCAGGATGCT
GGGCACAAGACCCTGCGGTTGTGTGTGTGTGAGGAACCATGGCTGCGGCCACAGCTGTGGCCACAGCGGCGGCGAGTGCC
TCCCCTGGGGGAGCTGCGGGTGCCCCTGAGGAAGTTGGTGCCCAACCGAGCCAGGAGCTTCAGTGTGTGTCTGGAGAAGC
GGAGGCTGACCAAGAGGCCGGAGCACCTGGACACATCC

Alignment

ORF - retro_mluc_1057 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.05 %
• Parental protein coverage: 99.56 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAAGWRWPQQVSMQEHMAIDVNPGPIQPIPLISDYFPHFYPFAEPARGAPGPHPAVSPASSAPQPQPDPE
          AAAGWR.PQ.VSMQEHMAIDVNPGPIQPIPLISDYFPHFY.FAEPARGAPGPHPAVSPASSAPQPQPDPE
Retrocopy AAAGWRRPQLVSMQEHMAIDVNPGPIQPIPLISDYFPHFYLFAEPARGAPGPHPAVSPASSAPQPQPDPE

Parental  PEGDSDNSATLGTLEFTLLFDADNSALHFTEHCAKGLKPPASGSLDTYVRANLLPGASKASQLRTCTVWG
          PEGDS..SATLGTLE.TLLFDADNSALHFT.HCAKGLKPPASGSLDTYVRANLLPGASKASQLRT.TV.G
Retrocopy PEGDSEDSATLGTLEITLLFDADNSALHFTAHCAKGLKPPASGSLDTYVRANLLPGASKASQLRTRTVRG

Parental  TRGPVWEETLTYHGFTHQDAGRKTLRLCVCEDPWLRPRLGPRQRRVPPLGELRVPLRKLVPNRARSFSVC
          TRGPVWEETLTYHGFTHQDAG.KTLRLCVCE.P............VPPLGELRVPLRKLVPNRARSFSVC
Retrocopy TRGPVWEETLTYHGFTHQDAGHKTLRLCVCEEPXXXXXXXXXXXXVPPLGELRVPLRKLVPNRARSFSVC

Parental  LEKQRMTKRPGRLDTS
          LEK.R.TKRP..LDTS
Retrocopy LEKRRLTKRPEHLDTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1057 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000028725	1 retrocopy	retro_mluc_1057 ,