RetrogeneDB ID: retro_mluc_1054

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429791:1414751..1415805(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025528
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NDRG3
• Ensembl ID: ENSMLUG00000009735
• Aliases: None
• Description: None

Sequence

>retro_mluc_1054
GAACTTCAGGATGTTCAACTCACAGAGATCAAACCACTTCTAAATATAAGAATGGTACACGAAACTTCCAGGACTTGACT
GTTGACTGTCAGGAACATGATATAGAAACTCCTCATGGTATGGTCCACGTCACTATAAGAGGCCTACCGAAGGAAACAGA
CCAGTTATTCTGACATATCATGACATTGGCCTCAATCATAAATCCTACTTCAATGCGTTCTTTAACTTTGAAGATATGCA
AGAGATCACTCAGCAGTTTACTGTCTGTCATGTGGATGCCCCAGGCCAACAGGAAGGTACACCCTCTTTCCCAACAGGGT
ACCAGTACCCCACAATGGATGAGCTAGCTGAAATGCTTCCTCCTGTTCTTACTCACTTAAGTGTGAAAAGCATCATTGGG
ATTGGAGTTGGAGCTGGAGCTTACATCCTCAGCAAATTTGCACTCAGTTATCCAGAGCTTGTGGAAGGCCTTGTGCTCAT
TAACCTTGACCCTTGTGCTAAAGGCTGGATTGACTGGGCAGCTTCCAAAATCTCAGGCTTGACAACCAATGTTGTGGACA
TTATTTTGGCTCATCACTTTGGGCAGGAAGAGTTGCAAGCCAACCTGGACCTGATTCAAACCTATAGACTCCATATTGCC
CAAGATATCAACCAAGAAAACCTACAGCTCTTCCTGTGTTCTTATAACGGACGCAGAGATCTGGAGATTGAAAGACCCAT
GCTGGGCCAAAATGATAACAAATCAAAGACTTTAAAGTGTTCCACTTTATTGGTGGTAGGGGACAGTTCACCCGAAGTTG
AGGCTGTGGTTGAATGCAATTCTCGCCTGAATCCTATAAATACAACTTTGCTAAAGATGGCAGACTGTGGTGGACTGCCC
CAAGTAGTTCAGCCCGGGAAGCTCACTGAGGCCTTCAAGTACTTTTTGCAGGGAATGGGATACATACCATCTGCCAGCAT
GACCCGGCCCATCCGATCACGAACCCACTCAACCTCAAGTATTATCGGCTCTGGAGAAAGTGCCTTCAGCCGATCTGTCA
CCAGCAATCAGTCA

Alignment

ORF - retro_mluc_1054 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.92 %
• Parental protein coverage: 90.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ELQDVQLTEIKPLLND-KNGTRNFQDF--DCQEHDIETPHGMVHVTIRGLPK-GNRPVILTYHDIGLNHK
          ELQDVQLTEIKPLLN..KNGTRNFQD...DCQEHDIETPHGMVHVTIRGLPK.GNRPVILTYHDIGLNHK
Retrocopy ELQDVQLTEIKPLLNI<KNGTRNFQDLTVDCQEHDIETPHGMVHVTIRGLPK<GNRPVILTYHDIGLNHK

Parental  SCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSVKSIIGIGVG
          S.FNAFFNFEDMQEITQ.F.VCHVDAPGQQEG.PSFPTGYQYPTMDELAEMLPPVLTHLSVKSIIGIGVG
Retrocopy SYFNAFFNFEDMQEITQQFTVCHVDAPGQQEGTPSFPTGYQYPTMDELAEMLPPVLTHLSVKSIIGIGVG

Parental  AGAYILSKFALNYPELVEGLVLINVDPCAKGWIDWAASKISGLTTNVVDIILAHHFGQEELQANLDLIQT
          AGAYILSKFAL.YPELVEGLVLIN.DPCAKGWIDWAASKISGLTTNVVDIILAHHFGQEELQANLDLIQT
Retrocopy AGAYILSKFALSYPELVEGLVLINLDPCAKGWIDWAASKISGLTTNVVDIILAHHFGQEELQANLDLIQT

Parental  YRLHIAQDINQENLQLFLCSYNGRRDLEIERPMLGQNDNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLN
          YRLHIAQDINQENLQLFLCSYNGRRDLEIERPMLGQNDNKSKTLKCSTLLVVGDSSP.VEAVVECNSRLN
Retrocopy YRLHIAQDINQENLQLFLCSYNGRRDLEIERPMLGQNDNKSKTLKCSTLLVVGDSSPEVEAVVECNSRLN

Parental  PINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPYVQLSHLSTESVPSASMTRLVRSRTHSTSSS
          PINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIP.............S.S......S.....S.S
Retrocopy PINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRPIRSRTHSTS--SIIGSGESAFSRS

Parental  IGSGES
          ..S..S
Retrocopy VTSNQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1054 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012562	1 retrocopy	retro_amel_378,
Echinops telfairi	ENSETEG00000002250	1 retrocopy	retro_etel_2102,
Myotis lucifugus	ENSMLUG00000005686	1 retrocopy	retro_mluc_2334,
Myotis lucifugus	ENSMLUG00000009735	1 retrocopy	retro_mluc_1054 ,
Otolemur garnettii	ENSOGAG00000000895	1 retrocopy	retro_ogar_515,
Sus scrofa	ENSSSCG00000007322	5 retrocopies	retro_sscr_1116, retro_sscr_144, retro_sscr_519, retro_sscr_539, retro_sscr_937,
Ictidomys tridecemlineatus	ENSSTOG00000022531	1 retrocopy	retro_itri_1284,