RetrogeneDB ID: retro_meug_858

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold209579:1076..2140(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IMPDH2
• Ensembl ID: ENSMEUG00000007895
• Aliases: None
• Description: IMP (inosine 5'-monophosphate) dehydrogenase 2 [Source:HGNC Symbol;Acc:6053]

Sequence

>retro_meug_858
GCATCATCTCCTCTTGACTTTCTCAAAGAGGAGGAACATGACCATTTTCTGGGCAAGATCATGACCAGCTGAGAGAATCT
CGTGGTGGCTCCTGCAGGAGTCACACTAAAAGAAGCCAATGAAATCTTGCAACGGAGCAAGAAAGGGAAGCTGCCCATTG
TAAATGAGGATGATGATCTAGTAGCCATCATTGCCCACACGGACCTGAAGAAGAATCGAGACTATCCCCTGGCATCCAAG
GACACCAAGAAGCAACTTTTGTGTGGGGCAGCCATTGGTACCCATGAGGATGACAAATATAGACTTGACTTGCTGGCCCA
GGCTGGTGTTGATGTGGTCGTGCTGGACTCTTCCCAAGGAAACTCCATTTTCCAAATTAACATAGTCAAGTACATCAAGG
AGAAATACAATAATCTTCAGGTTATCAGTGGCAATGTGGTGACAGCTGCACAGGCAAAAAACCTCATTGAGCTGGAGTGG
ACGCTCTGTGAGTTGGAATGGGCAGTGGCTCCATCTGTATCACACAGGAAGTGCTGGCATGTGGGTGGCCTCAGGCAAAA
GCTGTATACAAGGTTTCAGAATATACACTGTGCTTTGGTGTCCCAGTCATTGCAGATGGTGGCATCCAAAATGGAGGCCA
CATTGCCAAAGCTCTTGCCCTTGGATCTTTCACAGTGATGATGGGCTCTCTGTTGGCAGCCACCACAGAGGCCCCTGGTG
AGTACTTCTGTGATGGGATCCGGCTAAAGAAATACCGGGGGGTGAGCTCTCTGGATACCATGGACAAGAACCTGGGTAGC
CAGAACCATTACTTCAGTGAAGCAGACAAAATCAAAGTGGCTCAGGGAGTGTCTGGGGCCGTGCAGGACAAAATGTCCAT
CCACAAGTTTGTCCCCTACTTGATTGCTGGCATCCAGCACTCCTGCCAAGATATTGGTGCCAAGACTCTAACACAAGTCA
GAGCCATGATGTACTCAGGGGAGCTGAAATTTGAGAAGAGGACATCATCTGCCCAGGTGGAAGGAGGTGTCCATGGACTC
CATTGTTATGAGAAGCGGCTCTTT

Alignment

ORF - retro_meug_858 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.69 %
• Parental protein coverage: 69.38 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSRDIDFLKEEEHDRFLGEIMTSREDLVVAPAGVTLKEANEILQRSKKGEGKLPIVNEKDELVAIIARTD
          .S...DFLKEEEHD.FLG.IMTS.E.LVVAPAGVTLKEANEILQRSKKG..KLPIVNE.D.LVAIIA.TD
Retrocopy ASSPLDFLKEEEHDHFLGKIMTS*ENLVVAPAGVTLKEANEILQRSKKG--KLPIVNEDDDLVAIIAHTD

Parental  LKKNRDYPLASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYSN
          LKKNRDYPLASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQIN..KYIKEKY.N
Retrocopy LKKNRDYPLASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINIVKYIKEKYNN

Parental  LQVIGGNVVTAAQAKNLID-AGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADG
          LQVI.GNVVTAAQAKNLI..AGVDAL.VGMGSGSICITQEVLACG.PQA.AVYKVSEY...FGVPVIADG
Retrocopy LQVISGNVVTAAQAKNLIE<AGVDAL*VGMGSGSICITQEVLACGWPQAKAVYKVSEYTLCFGVPVIADG

Parental  GIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKNLGSQNRYFSEAD
          GIQN.GHIAKALALG..TVMMGSLLAATTEAPGEYF..DGIRLKKYRG..SLD.MDKNLGSQN.YFSEAD
Retrocopy GIQNGGHIAKALALGSFTVMMGSLLAATTEAPGEYF-CDGIRLKKYRGVSSLDTMDKNLGSQNHYFSEAD

Parental  KIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHG
          KIKVAQGVSGAVQDK.SIHKFVPYLIAGIQHSCQDIGAK.LTQVRAMMYSGELKFEKRTSSAQVEGGVHG
Retrocopy KIKVAQGVSGAVQDKMSIHKFVPYLIAGIQHSCQDIGAKTLTQVRAMMYSGELKFEKRTSSAQVEGGVHG

Parental  LHSYEKRLF
          LH.YEKRLF
Retrocopy LHCYEKRLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_858 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_858 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007895	3 retrocopies	retro_meug_1474, retro_meug_858 , retro_meug_998,
Macropus eugenii	ENSMEUG00000016082	2 retrocopies	retro_meug_2095, retro_meug_542,