RetrogeneDB ID: | retro_meug_1474 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold418494:688..1606(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000006275 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | IMPDH2 | ||
| Ensembl ID: | ENSMEUG00000007895 | ||
| Aliases: | None | ||
| Description: | IMP (inosine 5'-monophosphate) dehydrogenase 2 [Source:HGNC Symbol;Acc:6053] |
Retrocopy-Parental alignment summary:
>retro_meug_1474
CTACCTATTGCGAATGAGGATGATGAGATAGCAGCCATCACTGCCCACACAGAACTGAAGAAGAATTGGGACTATCCCCT
GGCATCCAAAGGCACCAAGAAGCAACTTTTGTATAGGGCAGCCATCAGTACCCATGAGGATGGCAAATATGGGCTTGACT
TGCTGGCCCCGACCAGTGTCGATGTGGTCATGGTGGACTCTTCCCAAGGAAACTCCATTTTCCAAATTAACATGATCAAA
TACCTCAAGGAGAAATATAATAACCTTCAGGTTATCAGTGTCAATGTGGTAACAGCTGCACAGGGAAAAAACCTCATTGA
TGCTGGAGTGGATGCCCTGAGGGTTGGCATGAGCAGTAGTTCCATCTGCATCACACAGGAGGTGCTGGCATGTAGGCAGC
CTTGGGCGACAGCTATATGCAAGGTTTCAGAATATGCACAGCGTTTTGGTGTCTCAGTCATTGCAGATAGTGGCATCCAA
AATGTGGGTCACATTGCCAAAGCTCTTGCCCTTGGAGCTTCCACAGTGATGATGGGCTCTCTGTTAGCAGCCACCACAGA
GGCCCCCAGCGAGTACTTCTTCTCTGATGGCATCCAGTTAAAGAAATGCCAGGGCGTGGGCTCCCTGGATGCCATGGACA
AGAACCTAGGCAGCCAGATCTTTTACTTCGGTGAAGCAGACGAAATCAAAGTGGCTCAGGGGATGTCTGGGGCCATGCAG
GACAAAGAGTCCATCCATAAGTTTATCTCCTACTTGATTGCTGACATCCAGCACTCCTGCCAAGATATCAGTGCCAAGAG
TCTAACACAAGTCAGAGCCATGATGTACTCAGGGGAGCAGAAATTTGAGAAGAGGATGTCATCTGCTCAGATGGAAGAAG
GTATCCATGGACTCCATTCATATGAGAAGCGGCTCTTC
ORF - retro_meug_1474 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.03 % |
| Parental protein coverage: | 59.3 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LPIVNEKDELVAIIARTDLKKNRDYPLASKDTKKQLLCGAAIGTHEDDKYRLDLLAQAGVDVVVLDSSQG |
| LPI.NE.DE..AI.A.T.LKKN.DYPLASK.TKKQLL..AAI.THED.KY.LDLLA...VDVV..DSSQG | |
| Retrocopy | LPIANEDDEIAAITAHTELKKNWDYPLASKGTKKQLLYRAAISTHEDGKYGLDLLAPTSVDVVMVDSSQG |
| Parental | NSIFQINMIKYIKEKYSNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVY |
| NSIFQINMIKY.KEKY.NLQVI..NVVTAAQ.KNLIDAGVDALRVGM.S.SICITQEVLAC..P.ATA.. | |
| Retrocopy | NSIFQINMIKYLKEKYNNLQVISVNVVTAAQGKNLIDAGVDALRVGMSSSSICITQEVLACRQPWATAIC |
| Parental | KVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLD |
| KVSEYA.RFGV.VIAD.GIQNVGHIAKALALGASTVMMGSLLAATTEAP.EYFFSDGI.LKK..G.GSLD | |
| Retrocopy | KVSEYAQRFGVSVIADSGIQNVGHIAKALALGASTVMMGSLLAATTEAPSEYFFSDGIQLKKCQGVGSLD |
| Parental | AMDKNLGSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGEL |
| AMDKNLGSQ..YF.EAD.IKVAQG.SGA.QDK.SIHKF..YLIA.IQHSCQDI.AKSLTQVRAMMYSGE. | |
| Retrocopy | AMDKNLGSQIFYFGEADEIKVAQGMSGAMQDKESIHKFISYLIADIQHSCQDISAKSLTQVRAMMYSGEQ |
| Parental | KFEKRTSSAQVEGGVHGLHSYEKRLF |
| KFEKR.SSAQ.E.G.HGLHSYEKRLF | |
| Retrocopy | KFEKRMSSAQMEEGIHGLHSYEKRLF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1474 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1474 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000007895 | 3 retrocopies |
retro_meug_1474 , retro_meug_858, retro_meug_998,
|
| Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies |