RetrogeneDB ID: retro_meug_852

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold20749:21712..22068(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HRAS
• Ensembl ID: ENSMEUG00000008467
• Aliases: None
• Description: Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173]

Sequence

>retro_meug_852
GAGAGACCTGTCTTGAATATTCTCGACACAGCAGGTCAAGAGGAATACAGTACAATGAGGGACCATTACAAGAGGACTGG
GGAGGGCTTTCTATGGGTATTTGCCATAAATAATATTAAATCATTTGAATATAGTCACCATTATAGAGAACAAATAAAAA
GAGTCAAAGATTCTGAAGACGTACCCATGGTCCTTGTAGGAAATAAATGTGATTTACCTTCCAGAACAGCAGATACAAAA
TGAGCTCAGGATTTAGCAAGAAGTTTTGGAATTCTTTCATTGAAACATCTGCAGAAACAAGACAGGATGTTGATGATGTC
CTTTACACATTAGTTGGTGAAATTTAAAAACATAAA

Alignment

ORF - retro_meug_852 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.17 %
• Parental protein coverage: 63.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC
          E...L.ILDTAGQEEYS.MRD.Y.RTGEGFL.VFAINN.KSFE..H.YREQIKRVKDS.DVPMVLVGNKC
Retrocopy ERPVLNILDTAGQEEYSTMRDHYKRTGEGFLWVFAINNIKSFEYSHHYREQIKRVKDSEDVPMVLVGNKC

Parental  DLPARTVETRQAQELARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQHK
          DLP.RT..T..AQ.LARS.GI...IETSA.TRQ.V.D..YTLV.EI..HK
Retrocopy DLPSRTADTK*AQDLARSFGI<SFIETSAETRQDVDDVLYTLVGEI*KHK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_852 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_852 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015293	3 retrocopies	retro_dnov_1358, retro_dnov_154, retro_dnov_2354,
Echinops telfairi	ENSETEG00000019899	2 retrocopies	retro_etel_1028, retro_etel_391,
Macropus eugenii	ENSMEUG00000000259	1 retrocopy	retro_meug_1638,
Macropus eugenii	ENSMEUG00000002675	1 retrocopy	retro_meug_2136,
Macropus eugenii	ENSMEUG00000008467	1 retrocopy	retro_meug_852 ,
Microcebus murinus	ENSMICG00000006472	1 retrocopy	retro_mmur_948,
Rattus norvegicus	ENSRNOG00000016611	1 retrocopy	retro_rnor_2941,