RetrogeneDB ID: | retro_meug_586 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold14169:4340..5136(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GPS1 | ||
| Ensembl ID: | ENSMEUG00000004609 | ||
| Aliases: | None | ||
| Description: | G protein pathway suppressor 1 [Source:HGNC Symbol;Acc:4549] |
Retrocopy-Parental alignment summary:
>retro_meug_586
TCCATTAAAGAAAGCATCAGAGAGGGGCACAGTGACCTAGGCAACCATTATCTTGATTCTTATCTGAGCAGTCCCCTCAA
GTGTTACTCCTGGACTTGGGACTTTTGTACCAGAGCCAAACATGTCATCAGTATGTACCTCAATGTAATCAAGGTCAGTG
TCTACTTGCAGAATTGGTCCCATGTCTTGATCTATTTTAGCAGAGCTGAGTGTACTCCTGAGATGGTAGAGCAGCTAGAG
GAAAGGGACAGCCAGACCCAGGCCATTCTCAGCAAGTTCAAGTGTGCAGTCAGCTTGGCTGAGTTGACTGCTCAAAAGTA
TAAGCAGATGGTCAAGTACTTTCTTTTAGCTTCATTTGATCACTGTGACTTCCTTGAGCTACTGTCCCCTCAGTAATATG
GCTGTATATGGTGGTCTCTGTGTCCTGGCTACCTTTGATTAACAGGAGCTACAATGCAATGACATCTCTTTCAAATTGTT
CTTGGAGTTGGAACCACAGGTTTGGGACATCATCTTTCAGTTCTATGAATCCAGATATTCCTCATGCATAAAGATGCTAG
ATGAGATGGACAGCTTGCAGCTGGACATGTATTTGGCTTCCCACCTCAGGACTTTCTATATCCAGAATCAAAACCATACC
CTTATCCAGTATTTCAGTCCCTGTGTCCATGCTGACATGCAAAAGATGGCTATAGCCTTCAGTATCACCAAGGCTGCACT
AGAGTTTGAACAAACAGAGGGGCTTATCACTACTTGAATTGACTTCCACAGATAGATTCTGTTTGCCCAGGATGTG
ORF - retro_meug_586 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.27 % |
| Parental protein coverage: | 59.83 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | SIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSKA |
| SIKESIR.GH.DLG.HYLD...LS..LKCYS...D.CT.AKHVI.M.LNVIKVSVYLQNWSHVL.Y.S.A | |
| Retrocopy | SIKESIREGHSDLGNHYLD-SYLSSPLKCYSWTWDFCTRAKHVISMYLNVIKVSVYLQNWSHVLIYFSRA |
| Parental | ESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLSP-SNVAVYGG |
| E.TPE..EQ..ERDSQTQAIL.K.KCA..LAEL.A.KYKQ..K.FLLASFDHCDF.ELLSP.SN.AVYGG | |
| Retrocopy | ECTPEMVEQLEERDSQTQAILSKFKCAVSLAELTAQKYKQMVKYFLLASFDHCDFLELLSP>SNMAVYGG |
| Parental | LCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRT |
| LC.LATFD.QELQ.N.IS...FKLFLELEPQV.DIIF.FYES.Y.SC.KMLDEM.D.L.LDMYLA.H.RT | |
| Retrocopy | LCVLATFD*QELQCNDIS---FKLFLELEPQVWDIIFQFYESRYSSCIKMLDEM-DSLQLDMYLASHLRT |
| Parental | LYTQIRNRALIQYFSPYVSADMRKMAIAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDV |
| .Y.Q..N..LIQYFSP.V.ADM.KMAIAF..T.AALE.E.T.....GLI...ID.H..IL.A.DV | |
| Retrocopy | FYIQNQNHTLIQYFSPCVHADMQKMAIAFSITKAALEFEQTE----GLITT*IDFHR*ILFAQDV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_586 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_586 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000004609 | 1 retrocopy |
retro_meug_586 ,
|
| Mus musculus | ENSMUSG00000025156 | 1 retrocopy |