RetrogeneDB ID: retro_meug_384

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold107786:64..480(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOB1B
• Ensembl ID: ENSMEUG00000014210
• Aliases: None
• Description: MOB kinase activator 1B [Source:HGNC Symbol;Acc:29801]

Sequence

>retro_meug_384
AAAGATACAAAGGGAATTCTCAGGAACAGCAACCTGCAGACAGCTATTATGCTTCCTGAGGGGGAAGACTTAAATGAATG
GGTTGCAGTGAACACTGTGGATTTCTTCAACCAGATCAATATGCTTTACGAGACCATCACTGACTTCTGTACTGAAGAAA
GCTGCCCTGTGATGTCAGCTGGCCCAAAATATGAGCATCACTGGGCAGAAGGAATAAATATAAAGAAGCCTGTTAAGTTT
TCTGTACCAAAGTACATTGATTACCTGATGACTTGGGTACAGGACCAGTTGGATGATGAGACATTATTTCCATCCAAAAG
AGGTATCTCCTTCCCAAAGAACTTCATGTCAGTGGCAAAACTATCCTGAAGTATCTGTTCATGAGGTATGTACATATTTA
CCACTAGCACTTTGAC

Alignment

ORF - retro_meug_384 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.71 %
• Parental protein coverage: 65.88 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KHAEATLGSGNLRTAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWAD
          K.....L...NL.TA.MLPEGEDLNEWVAVNTVDFFNQINMLY.TITDFCTEESCPVMSAGPKYE.HWA.
Retrocopy KDTKGILRNSNLQTAIMLPEGEDLNEWVAVNTVDFFNQINMLYETITDFCTEESCPVMSAGPKYEHHWAE

Parental  GTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLSVA-KTILKRLFRVYAHIYHQHFD
          G.NIKKP.K.S.PKYIDYLMTWVQDQLDDETLFPSK.G..FPKNF.SVA.KTILK.LF..Y.HIYH.HFD
Retrocopy GINIKKPVKFSVPKYIDYLMTWVQDQLDDETLFPSKRGISFPKNFMSVA<KTILKYLFMRYVHIYH*HFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_384 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_384 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012418	3 retrocopies	retro_chof_1124, retro_chof_1337, retro_chof_660,
Macropus eugenii	ENSMEUG00000014210	1 retrocopy	retro_meug_384 ,
Microcebus murinus	ENSMICG00000006469	2 retrocopies	retro_mmur_1622, retro_mmur_653,
Myotis lucifugus	ENSMLUG00000005838	1 retrocopy	retro_mluc_1067,
Ochotona princeps	ENSOPRG00000009133	1 retrocopy	retro_opri_386,
Sus scrofa	ENSSSCG00000008941	2 retrocopies	retro_sscr_377, retro_sscr_586,
Vicugna pacos	ENSVPAG00000011892	1 retrocopy	retro_vpac_35,