RetrogeneDB ID: retro_meug_293

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_9781:40080..40569(+)
• Located in intron of: ENSMEUG00000014656

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP5
• Ensembl ID: ENSMEUG00000006088
• Aliases: None
• Description: receptor accessory protein 5 [Source:HGNC Symbol;Acc:30077]

Sequence

>retro_meug_293
TTGAAGCAGTGCTTCCAGAGGTTTCTGGAGCAGAAAAACATTGTCACGAATGCCCTGGGCAAGGTGGAGGAGGTCTCCAG
TGTCAAAAAGTACTATCTGACTACAAGTTTCATTGCTTTTCTAGCCCTCTGTCTCATATTTGGCTGTGAGGCTTCCCTAA
TCTACAATCTCATCAGATTCATCTACCCAGCATATGCCTCTATCAAGGCCATTGAAAATCCCAACAAAAATGATGATACC
ATCTAGCTAACCTACTAGGTGGTATACAGCATGTTTGGCCTGGCTGAGTTTTTCTCTGACATCTTCCTTTTCTGGTTCCC
CTTCAATTATGCAGGGAAGTGTGCCTTCTTGCTATGGTGCATGCTTCCAGTAGTCTGCAATGGTTCCCAGATCCTGTACC
ATTGCCTGATCCACCCCATGTTCCTGAGGCACCAGGCTTCCATGGACAACCTGATGATTGACCTGAGTGGATGAGCCCTG
GTCACAGCA

Alignment

ORF - retro_meug_293 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.37 %
• Parental protein coverage: 94.22 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRERFDQFLHQKNCMTDLLAKIEGKTGVNRSYIALGIIGLVALYLVFGYGASLLCNLIGFGYPAYVSIKA
          ....F..FL.QKN..T..L.K.E....V...Y.....I...AL.L.FG..ASL..NLI.F.YPAY.SIKA
Retrocopy LKQCFQRFLEQKNIVTNALGKVEEVSSVKKYYLTTSFIAFLALCLIFGCEASLIYNLIRFIYPAYASIKA

Parental  IESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMAPSPSNGAEMLYRRIIRPF
          IE.PNK.DDT..LTY.VVY..F..AEFFSD.FL.WFPF.Y..KC.FLLWCM.P...NG...LY...I.P.
Retrocopy IENPNKNDDTI*LTY*VVYSMFGLAEFFSDIFLFWFPFNYAGKCAFLLWCMLPVVCNGSQILYHCLIHPM

Parental  FLKHESQMDNVVKDLKDKAKETA
          FL.H...MDN...DL...A..TA
Retrocopy FLRHQASMDNLMIDLSG*ALVTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_293 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_293 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010270	1 retrocopy	retro_etel_2208,
Macropus eugenii	ENSMEUG00000006088	4 retrocopies	retro_meug_1110, retro_meug_1625, retro_meug_293 , retro_meug_747,
Tursiops truncatus	ENSTTRG00000001691	1 retrocopy	retro_ttru_1155,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,